Results 81 - 100 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 122685 | 0.66 | 0.7771 |
Target: 5'- gCCGCcgucucgacgauGGGCGGcCGU-CUCGGCGGCGa -3' miRNA: 3'- -GGCG------------UCCGUCuGUAcGGGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 159314 | 0.66 | 0.783475 |
Target: 5'- gCCGCgucgcgguucgacgAGGCGGACGgcgaggauccccUGCCCcccgccgcguGCGGCGg -3' miRNA: 3'- -GGCG--------------UCCGUCUGU------------ACGGGu---------CGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 79692 | 0.66 | 0.783475 |
Target: 5'- cCCGCgacagacaccaugaGGGCAGACGcGCCUccGCGGCc- -3' miRNA: 3'- -GGCG--------------UCCGUCUGUaCGGGu-CGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 150839 | 0.66 | 0.785285 |
Target: 5'- gCCGCAGGUcguGACGcguacucUGCCguGCcGCGc -3' miRNA: 3'- -GGCGUCCGu--CUGU-------ACGGguCGuCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 52868 | 0.66 | 0.786188 |
Target: 5'- -aGCGGGCAGGCucgcgguaccUGCCaUAGCAGgGc -3' miRNA: 3'- ggCGUCCGUCUGu---------ACGG-GUCGUCgCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 158512 | 0.66 | 0.786188 |
Target: 5'- gCCGCcagGGGCAGGCcUGCgCuGUGGUGg -3' miRNA: 3'- -GGCG---UCCGUCUGuACGgGuCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 146777 | 0.66 | 0.795141 |
Target: 5'- gCCGCGcGGCGGuucUcgGUgCGGCGGUGUg -3' miRNA: 3'- -GGCGU-CCGUCu--GuaCGgGUCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 36122 | 0.66 | 0.776185 |
Target: 5'- cUCGCcGGCcGACGauuucuuUGCCCAcGUAGCGc -3' miRNA: 3'- -GGCGuCCGuCUGU-------ACGGGU-CGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 138462 | 0.66 | 0.77435 |
Target: 5'- gCCGCcGGgGGAgccgcgaagccgguCAUGCCagAGCGGCGg -3' miRNA: 3'- -GGCGuCCgUCU--------------GUACGGg-UCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 24916 | 0.66 | 0.767888 |
Target: 5'- gUCGCuGGGguGACGcgaucuuaucGCCCGGCuGCGg -3' miRNA: 3'- -GGCG-UCCguCUGUa---------CGGGUCGuCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 157872 | 0.67 | 0.720248 |
Target: 5'- gCGCGGGCAc-CGUGCCgAGuCGGUGa -3' miRNA: 3'- gGCGUCCGUcuGUACGGgUC-GUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 99387 | 0.67 | 0.729957 |
Target: 5'- uCCGCAacGGCGGAgcggggUAUGCCaGGCAaGCGa -3' miRNA: 3'- -GGCGU--CCGUCU------GUACGGgUCGU-CGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 75727 | 0.67 | 0.729957 |
Target: 5'- cCCGCGGGCgccggAGGCcaGUCUGGguGCGUu -3' miRNA: 3'- -GGCGUCCG-----UCUGuaCGGGUCguCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 70675 | 0.67 | 0.739585 |
Target: 5'- gCCGCcGGCAGGCAauuuuuacGCCC-GCGGgCGa -3' miRNA: 3'- -GGCGuCCGUCUGUa-------CGGGuCGUC-GCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 84610 | 0.67 | 0.739585 |
Target: 5'- cCCGCAaggauGCAGcguugcuccguACGUGCCCcuGGCGGUGUc -3' miRNA: 3'- -GGCGUc----CGUC-----------UGUACGGG--UCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 101315 | 0.66 | 0.749121 |
Target: 5'- gCC-CAGcGCGauaauCAUGCCCAGguGCGg -3' miRNA: 3'- -GGcGUC-CGUcu---GUACGGGUCguCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 123012 | 0.66 | 0.755738 |
Target: 5'- aCCGCcaagcaGGGCGGcACAUGCCUccucgcccaccaggGGCuuGGCGg -3' miRNA: 3'- -GGCG------UCCGUC-UGUACGGG--------------UCG--UCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 40308 | 0.66 | 0.758558 |
Target: 5'- gCUGCGcGUAGACGgcgaGCgCAGCAGUGUc -3' miRNA: 3'- -GGCGUcCGUCUGUa---CGgGUCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 68019 | 0.66 | 0.758558 |
Target: 5'- gCCGCGGagcgccaaagaGCGGAuaaccgcuucCGUGCCCgacgaGGCGGCGa -3' miRNA: 3'- -GGCGUC-----------CGUCU----------GUACGGG-----UCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 123616 | 0.66 | 0.767888 |
Target: 5'- aCGCAGGCccuccccGcCAgcGCCgCGGCGGCGUa -3' miRNA: 3'- gGCGUCCGu------CuGUa-CGG-GUCGUCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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