miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 3' -48.4 NC_005264.1 + 122536 0.66 0.999725
Target:  5'- cGCuCGcCGUCUA-CGCGcAGCUUUCa -3'
miRNA:   3'- -CGuGCuGCAGAUaGUGUuUCGAGAGc -5'
24399 3' -48.4 NC_005264.1 + 129607 0.66 0.999725
Target:  5'- gGCGCGGCG------GCGAAGCUuCUCGa -3'
miRNA:   3'- -CGUGCUGCagauagUGUUUCGA-GAGC- -5'
24399 3' -48.4 NC_005264.1 + 73841 0.66 0.999683
Target:  5'- gGCGCGACGaacggaauucuguguUCccgGUCACuGAGCUCa-- -3'
miRNA:   3'- -CGUGCUGC---------------AGa--UAGUGuUUCGAGagc -5'
24399 3' -48.4 NC_005264.1 + 51997 0.66 0.999652
Target:  5'- uGCG-GACGUCgcgCGCGGAGCgaccccgCUCa -3'
miRNA:   3'- -CGUgCUGCAGauaGUGUUUCGa------GAGc -5'
24399 3' -48.4 NC_005264.1 + 48688 0.66 0.999564
Target:  5'- gGCGCGA-GUCUgcucGUCGCGGucGCUCgCGg -3'
miRNA:   3'- -CGUGCUgCAGA----UAGUGUUu-CGAGaGC- -5'
24399 3' -48.4 NC_005264.1 + 130552 0.66 0.999564
Target:  5'- uCGCGGCGcgugugCUAcgCGCAGGucucGCUCUCGg -3'
miRNA:   3'- cGUGCUGCa-----GAUa-GUGUUU----CGAGAGC- -5'
24399 3' -48.4 NC_005264.1 + 138507 0.66 0.999456
Target:  5'- cGCGCGAUuUCacUCGCGAAgaaacGCUCUCu -3'
miRNA:   3'- -CGUGCUGcAGauAGUGUUU-----CGAGAGc -5'
24399 3' -48.4 NC_005264.1 + 77457 0.66 0.999325
Target:  5'- cCGCGugGUCgcggUACAcAGCggCUCGg -3'
miRNA:   3'- cGUGCugCAGaua-GUGUuUCGa-GAGC- -5'
24399 3' -48.4 NC_005264.1 + 49304 0.66 0.999325
Target:  5'- aGCACGACcUCUcgUACAAGGaC-CUCc -3'
miRNA:   3'- -CGUGCUGcAGAuaGUGUUUC-GaGAGc -5'
24399 3' -48.4 NC_005264.1 + 64433 0.66 0.999325
Target:  5'- gGCgAUGACGUCUGcCGC--GGCUCUa- -3'
miRNA:   3'- -CG-UGCUGCAGAUaGUGuuUCGAGAgc -5'
24399 3' -48.4 NC_005264.1 + 110852 0.66 0.999325
Target:  5'- cGCGCGACGUC---CGCAAuAGCUacagCGa -3'
miRNA:   3'- -CGUGCUGCAGauaGUGUU-UCGAga--GC- -5'
24399 3' -48.4 NC_005264.1 + 38043 0.66 0.999325
Target:  5'- uGCACGACG---GUCGCGuGGgUCUCc -3'
miRNA:   3'- -CGUGCUGCagaUAGUGUuUCgAGAGc -5'
24399 3' -48.4 NC_005264.1 + 74504 0.66 0.999325
Target:  5'- uGCGCGGCugguggauGUCUAUCAUcagGGAGUuauUCUCu -3'
miRNA:   3'- -CGUGCUG--------CAGAUAGUG---UUUCG---AGAGc -5'
24399 3' -48.4 NC_005264.1 + 81740 0.66 0.999325
Target:  5'- uGCcUGACGUUcGUgGCAAAcccggcGCUCUCGg -3'
miRNA:   3'- -CGuGCUGCAGaUAgUGUUU------CGAGAGC- -5'
24399 3' -48.4 NC_005264.1 + 157070 0.66 0.999325
Target:  5'- uGCACGACG---GUCGCGuGGgUCUCc -3'
miRNA:   3'- -CGUGCUGCagaUAGUGUuUCgAGAGc -5'
24399 3' -48.4 NC_005264.1 + 43160 0.67 0.999169
Target:  5'- cCGCGuCGUUgAUCAgcCcGAGCUCUCGa -3'
miRNA:   3'- cGUGCuGCAGaUAGU--GuUUCGAGAGC- -5'
24399 3' -48.4 NC_005264.1 + 5420 0.67 0.99876
Target:  5'- aCGCGGCaUCUGUCucggcguCGccGCUCUCGc -3'
miRNA:   3'- cGUGCUGcAGAUAGu------GUuuCGAGAGC- -5'
24399 3' -48.4 NC_005264.1 + 124447 0.67 0.99876
Target:  5'- aCGCGGCaUCUGUCucggcguCGccGCUCUCGc -3'
miRNA:   3'- cGUGCUGcAGAUAGu------GUuuCGAGAGC- -5'
24399 3' -48.4 NC_005264.1 + 12590 0.67 0.998499
Target:  5'- uGCGaagUGGCGUCUuuGUUGCGAGGUUaCUCGu -3'
miRNA:   3'- -CGU---GCUGCAGA--UAGUGUUUCGA-GAGC- -5'
24399 3' -48.4 NC_005264.1 + 116410 0.67 0.998499
Target:  5'- gGC-CGACGUCgagCGCAGGGCgg-CGu -3'
miRNA:   3'- -CGuGCUGCAGauaGUGUUUCGagaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.