Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24399 | 3' | -48.4 | NC_005264.1 | + | 114420 | 1.13 | 0.010354 |
Target: 5'- uGCACGACGUCUAUCACAAAGCUCUCGg -3' miRNA: 3'- -CGUGCUGCAGAUAGUGUUUCGAGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 5532 | 0.78 | 0.742897 |
Target: 5'- cCGCGGCGUCUcgCGCGGAGCggguuUCUCu -3' miRNA: 3'- cGUGCUGCAGAuaGUGUUUCG-----AGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 106222 | 0.77 | 0.791996 |
Target: 5'- uGCAgCGGCGUCUauuacucgagcgGUCGCGAGGCgCUCGc -3' miRNA: 3'- -CGU-GCUGCAGA------------UAGUGUUUCGaGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 91571 | 0.76 | 0.869763 |
Target: 5'- gGCACGAgGcUUGUCGCGGAGCUCa-- -3' miRNA: 3'- -CGUGCUgCaGAUAGUGUUUCGAGagc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 91104 | 0.73 | 0.934393 |
Target: 5'- aCGCGAUGgCUGUCGCGGAGUccuggCUCGa -3' miRNA: 3'- cGUGCUGCaGAUAGUGUUUCGa----GAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 45943 | 0.71 | 0.976423 |
Target: 5'- uGCAUGACGUCguuugagCACGAGGCUgC-CGu -3' miRNA: 3'- -CGUGCUGCAGaua----GUGUUUCGA-GaGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 66352 | 0.7 | 0.985129 |
Target: 5'- uGCACGACGcucgccUCUAUCACGAAcGCga-CGg -3' miRNA: 3'- -CGUGCUGC------AGAUAGUGUUU-CGagaGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 54341 | 0.7 | 0.988433 |
Target: 5'- cGCGCGGCGUUUAUgGC-GAGC-CUUa -3' miRNA: 3'- -CGUGCUGCAGAUAgUGuUUCGaGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 139716 | 0.7 | 0.988433 |
Target: 5'- aCGCGACGUCUAUCuCuc-GCUCgUUGg -3' miRNA: 3'- cGUGCUGCAGAUAGuGuuuCGAG-AGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 36172 | 0.69 | 0.992288 |
Target: 5'- aGCGCGACGggacgAUCGCAAucuacGGCUCa-- -3' miRNA: 3'- -CGUGCUGCaga--UAGUGUU-----UCGAGagc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 110396 | 0.69 | 0.994145 |
Target: 5'- cGCACGGCGUCgg-CAgGcucGAGCcaguacuUCUCGg -3' miRNA: 3'- -CGUGCUGCAGauaGUgU---UUCG-------AGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 35305 | 0.69 | 0.996022 |
Target: 5'- uCACGACG-CUAUCACGuaugacauggaaacgGGGCUaUCGa -3' miRNA: 3'- cGUGCUGCaGAUAGUGU---------------UUCGAgAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 35899 | 0.68 | 0.99639 |
Target: 5'- gGCGUGGUGUCgggGUCGCu-GGCUCUCGc -3' miRNA: 3'- -CGUGCUGCAGa--UAGUGuuUCGAGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 143785 | 0.68 | 0.99694 |
Target: 5'- cCGCGGCGggCUuaGUCACGAAcGCUUUCc -3' miRNA: 3'- cGUGCUGCa-GA--UAGUGUUU-CGAGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 67555 | 0.68 | 0.99694 |
Target: 5'- -gGCGGCGUCUcucUCACuGAGCcacugCUCGu -3' miRNA: 3'- cgUGCUGCAGAu--AGUGuUUCGa----GAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 34980 | 0.68 | 0.997419 |
Target: 5'- uCGCGACGUUUGUCguguuccgugccGCGAgcGGCgCUCGa -3' miRNA: 3'- cGUGCUGCAGAUAG------------UGUU--UCGaGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 154007 | 0.68 | 0.997419 |
Target: 5'- uCGCGACGUUUGUCguguuccgugccGCGAgcGGCgCUCGa -3' miRNA: 3'- cGUGCUGCAGAUAG------------UGUU--UCGaGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 68910 | 0.67 | 0.998192 |
Target: 5'- uGCGCG-CGaaUGUgGCGAAGCUUUCc -3' miRNA: 3'- -CGUGCuGCagAUAgUGUUUCGAGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 122930 | 0.67 | 0.998499 |
Target: 5'- gGUGCG-CGUCUcgUACAacaaAAGCUUUCa -3' miRNA: 3'- -CGUGCuGCAGAuaGUGU----UUCGAGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 95576 | 0.67 | 0.998499 |
Target: 5'- aGCGCGAC-UCa---AUAAGGCUCUCu -3' miRNA: 3'- -CGUGCUGcAGauagUGUUUCGAGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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