Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24399 | 3' | -48.4 | NC_005264.1 | + | 122536 | 0.66 | 0.999725 |
Target: 5'- cGCuCGcCGUCUA-CGCGcAGCUUUCa -3' miRNA: 3'- -CGuGCuGCAGAUaGUGUuUCGAGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 139716 | 0.7 | 0.988433 |
Target: 5'- aCGCGACGUCUAUCuCuc-GCUCgUUGg -3' miRNA: 3'- cGUGCUGCAGAUAGuGuuuCGAG-AGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 45943 | 0.71 | 0.976423 |
Target: 5'- uGCAUGACGUCguuugagCACGAGGCUgC-CGu -3' miRNA: 3'- -CGUGCUGCAGaua----GUGUUUCGA-GaGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 114420 | 1.13 | 0.010354 |
Target: 5'- uGCACGACGUCUAUCACAAAGCUCUCGg -3' miRNA: 3'- -CGUGCUGCAGAUAGUGUUUCGAGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 48688 | 0.66 | 0.999564 |
Target: 5'- gGCGCGA-GUCUgcucGUCGCGGucGCUCgCGg -3' miRNA: 3'- -CGUGCUgCAGA----UAGUGUUu-CGAGaGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 138507 | 0.66 | 0.999456 |
Target: 5'- cGCGCGAUuUCacUCGCGAAgaaacGCUCUCu -3' miRNA: 3'- -CGUGCUGcAGauAGUGUUU-----CGAGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 74504 | 0.66 | 0.999325 |
Target: 5'- uGCGCGGCugguggauGUCUAUCAUcagGGAGUuauUCUCu -3' miRNA: 3'- -CGUGCUG--------CAGAUAGUG---UUUCG---AGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 38043 | 0.66 | 0.999325 |
Target: 5'- uGCACGACG---GUCGCGuGGgUCUCc -3' miRNA: 3'- -CGUGCUGCagaUAGUGUuUCgAGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 122930 | 0.67 | 0.998499 |
Target: 5'- gGUGCG-CGUCUcgUACAacaaAAGCUUUCa -3' miRNA: 3'- -CGUGCuGCAGAuaGUGU----UUCGAGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 95576 | 0.67 | 0.998499 |
Target: 5'- aGCGCGAC-UCa---AUAAGGCUCUCu -3' miRNA: 3'- -CGUGCUGcAGauagUGUUUCGAGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 116410 | 0.67 | 0.998499 |
Target: 5'- gGC-CGACGUCgagCGCAGGGCgg-CGu -3' miRNA: 3'- -CGuGCUGCAGauaGUGUUUCGagaGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 73841 | 0.66 | 0.999683 |
Target: 5'- gGCGCGACGaacggaauucuguguUCccgGUCACuGAGCUCa-- -3' miRNA: 3'- -CGUGCUGC---------------AGa--UAGUGuUUCGAGagc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 68910 | 0.67 | 0.998192 |
Target: 5'- uGCGCG-CGaaUGUgGCGAAGCUUUCc -3' miRNA: 3'- -CGUGCuGCagAUAgUGUUUCGAGAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 51997 | 0.66 | 0.999652 |
Target: 5'- uGCG-GACGUCgcgCGCGGAGCgaccccgCUCa -3' miRNA: 3'- -CGUgCUGCAGauaGUGUUUCGa------GAGc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 5420 | 0.67 | 0.99876 |
Target: 5'- aCGCGGCaUCUGUCucggcguCGccGCUCUCGc -3' miRNA: 3'- cGUGCUGcAGAUAGu------GUuuCGAGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 34980 | 0.68 | 0.997419 |
Target: 5'- uCGCGACGUUUGUCguguuccgugccGCGAgcGGCgCUCGa -3' miRNA: 3'- cGUGCUGCAGAUAG------------UGUU--UCGaGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 91571 | 0.76 | 0.869763 |
Target: 5'- gGCACGAgGcUUGUCGCGGAGCUCa-- -3' miRNA: 3'- -CGUGCUgCaGAUAGUGUUUCGAGagc -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 130552 | 0.66 | 0.999564 |
Target: 5'- uCGCGGCGcgugugCUAcgCGCAGGucucGCUCUCGg -3' miRNA: 3'- cGUGCUGCa-----GAUa-GUGUUU----CGAGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 81740 | 0.66 | 0.999325 |
Target: 5'- uGCcUGACGUUcGUgGCAAAcccggcGCUCUCGg -3' miRNA: 3'- -CGuGCUGCAGaUAgUGUUU------CGAGAGC- -5' |
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24399 | 3' | -48.4 | NC_005264.1 | + | 129607 | 0.66 | 0.999725 |
Target: 5'- gGCGCGGCG------GCGAAGCUuCUCGa -3' miRNA: 3'- -CGUGCUGCagauagUGUUUCGA-GAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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