miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 144081 0.66 0.925916
Target:  5'- aGACGGaagAUGUCGGagcGCGCCUCGucuuuCuCGGa -3'
miRNA:   3'- -CUGCU---UGCAGCU---CGCGGAGCu----GcGCC- -5'
24399 5' -56.9 NC_005264.1 + 69197 0.66 0.925916
Target:  5'- cGACG-AUGUaucGCGCUUgGAUGCGGa -3'
miRNA:   3'- -CUGCuUGCAgcuCGCGGAgCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 99971 0.66 0.925916
Target:  5'- aGACGAG-GcCaAGCGCCUCGugGaCGa -3'
miRNA:   3'- -CUGCUUgCaGcUCGCGGAGCugC-GCc -5'
24399 5' -56.9 NC_005264.1 + 95360 0.66 0.923816
Target:  5'- cGACGGGCGgCGcGUGCCgccaaacugccaGGCGUGGg -3'
miRNA:   3'- -CUGCUUGCaGCuCGCGGag----------CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 56314 0.66 0.920599
Target:  5'- cGACGAACcgauaGcCGuuCGCgUCGACGUGGc -3'
miRNA:   3'- -CUGCUUG-----CaGCucGCGgAGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 146833 0.66 0.920599
Target:  5'- cGGCGGuCGUCGccUGCCaUGAUGCGGc -3'
miRNA:   3'- -CUGCUuGCAGCucGCGGaGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 144533 0.66 0.920599
Target:  5'- aGACGGACGgccucGCGCaaCGACGaCGGa -3'
miRNA:   3'- -CUGCUUGCagcu-CGCGgaGCUGC-GCC- -5'
24399 5' -56.9 NC_005264.1 + 19886 0.66 0.920599
Target:  5'- cGCGGccGCGcuagccauuUCGGGUGCUUUGugGUGGc -3'
miRNA:   3'- cUGCU--UGC---------AGCUCGCGGAGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 56595 0.66 0.920599
Target:  5'- aGCaGGCG-CGAGCGCCUCGcgacCGCu- -3'
miRNA:   3'- cUGcUUGCaGCUCGCGGAGCu---GCGcc -5'
24399 5' -56.9 NC_005264.1 + 67359 0.66 0.91896
Target:  5'- gGGCGGaaaacguagcgcccGCGcUCGcuGCGCCcgcCGGCGCGGu -3'
miRNA:   3'- -CUGCU--------------UGC-AGCu-CGCGGa--GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 48389 0.66 0.915057
Target:  5'- aGACugGGGCGUCGGGCggcgGCCagGA-GCGGg -3'
miRNA:   3'- -CUG--CUUGCAGCUCG----CGGagCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 10394 0.66 0.914491
Target:  5'- cGACGGGgagggauCGUCGAGCGggaUCGugGCa- -3'
miRNA:   3'- -CUGCUU-------GCAGCUCGCgg-AGCugCGcc -5'
24399 5' -56.9 NC_005264.1 + 129421 0.66 0.914491
Target:  5'- cGACGGGgagggauCGUCGAGCGggaUCGugGCa- -3'
miRNA:   3'- -CUGCUU-------GCAGCUCGCgg-AGCugCGcc -5'
24399 5' -56.9 NC_005264.1 + 61240 0.66 0.911625
Target:  5'- uGGCGAugGcgcgcuccagcucaCGGcGCGCCUCGGCGUa- -3'
miRNA:   3'- -CUGCUugCa-------------GCU-CGCGGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 13965 0.66 0.909292
Target:  5'- cGACGAGgaGaCGAGCGa---GACGCGGg -3'
miRNA:   3'- -CUGCUUg-CaGCUCGCggagCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 116559 0.66 0.909292
Target:  5'- aGGCG-GCGUCGAuGCGCagCUCGGCGa-- -3'
miRNA:   3'- -CUGCuUGCAGCU-CGCG--GAGCUGCgcc -5'
24399 5' -56.9 NC_005264.1 + 67176 0.66 0.903305
Target:  5'- gGugGAugG-CGgccugcAGCGCUaUGACGCGGc -3'
miRNA:   3'- -CugCUugCaGC------UCGCGGaGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 126086 0.66 0.903305
Target:  5'- cGGCGAcgGCGcCGgccGGCGCCgucgCGcUGCGGg -3'
miRNA:   3'- -CUGCU--UGCaGC---UCGCGGa---GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 35963 0.66 0.903305
Target:  5'- cGACGAugG-CGAuuCGCCUggagggGGCGCGGa -3'
miRNA:   3'- -CUGCUugCaGCUc-GCGGAg-----CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 55156 0.66 0.903305
Target:  5'- uGGCGcAGCGUau-GCgGCCUCugGGCGCGGc -3'
miRNA:   3'- -CUGC-UUGCAgcuCG-CGGAG--CUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.