miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 35963 0.66 0.903305
Target:  5'- cGACGAugG-CGAuuCGCCUggagggGGCGCGGa -3'
miRNA:   3'- -CUGCUugCaGCUc-GCGGAg-----CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 67176 0.66 0.903305
Target:  5'- gGugGAugG-CGgccugcAGCGCUaUGACGCGGc -3'
miRNA:   3'- -CugCUugCaGC------UCGCGGaGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 126086 0.66 0.903305
Target:  5'- cGGCGAcgGCGcCGgccGGCGCCgucgCGcUGCGGg -3'
miRNA:   3'- -CUGCU--UGCaGC---UCGCGGa---GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 152290 0.66 0.903305
Target:  5'- cGGCGAACGcgCGAuccGCGCCccugagggCGGCGCc- -3'
miRNA:   3'- -CUGCUUGCa-GCU---CGCGGa-------GCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 6439 0.67 0.890019
Target:  5'- cGGCG-GCGUCGcuGGCGgagaacuCCUCGgcgGCGCGGc -3'
miRNA:   3'- -CUGCuUGCAGC--UCGC-------GGAGC---UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 69591 0.67 0.862878
Target:  5'- cGCGAACGcgccgacgaGGGCGCCgccCGGCGUGa -3'
miRNA:   3'- cUGCUUGCag-------CUCGCGGa--GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 142687 0.67 0.862878
Target:  5'- cGCGAuc-UUGGGCGCCggCGGCGCGc -3'
miRNA:   3'- cUGCUugcAGCUCGCGGa-GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 103691 0.67 0.877187
Target:  5'- gGGCGAGggggaaGUUGAGgGCCaguggagcggCGGCGCGGc -3'
miRNA:   3'- -CUGCUUg-----CAGCUCgCGGa---------GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 30374 0.67 0.884036
Target:  5'- cGGCGccgccGCGUC--GCGUCUCGGCgGCGGc -3'
miRNA:   3'- -CUGCu----UGCAGcuCGCGGAGCUG-CGCC- -5'
24399 5' -56.9 NC_005264.1 + 44244 0.67 0.884036
Target:  5'- cGGCGAA-GUCGcccaAGUGCUguUCGGCGCGu -3'
miRNA:   3'- -CUGCUUgCAGC----UCGCGG--AGCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 46229 0.67 0.884036
Target:  5'- cGACGAACGUguugCGAccggagaagaccGCGCCUgGGgGCGu -3'
miRNA:   3'- -CUGCUUGCA----GCU------------CGCGGAgCUgCGCc -5'
24399 5' -56.9 NC_005264.1 + 120400 0.67 0.890674
Target:  5'- -uCGAGCG-CGAGUGCCgcagCGccgaACGCGa -3'
miRNA:   3'- cuGCUUGCaGCUCGCGGa---GC----UGCGCc -5'
24399 5' -56.9 NC_005264.1 + 19420 0.67 0.877187
Target:  5'- aGGCGAgGCGcCGGGUgugGCCgcggGGCGCGGg -3'
miRNA:   3'- -CUGCU-UGCaGCUCG---CGGag--CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 75680 0.67 0.884036
Target:  5'- uGCGGA-GUCGcgcgcAGCGCCgucuuUCGGCGCGa -3'
miRNA:   3'- cUGCUUgCAGC-----UCGCGG-----AGCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 150692 0.67 0.884036
Target:  5'- cGCGAACGcgCGAGgcaggGCuCUCGGCGgGGc -3'
miRNA:   3'- cUGCUUGCa-GCUCg----CG-GAGCUGCgCC- -5'
24399 5' -56.9 NC_005264.1 + 88095 0.67 0.890674
Target:  5'- -gUGcGCGUCGggcacAGCGUCggcCGGCGCGGu -3'
miRNA:   3'- cuGCuUGCAGC-----UCGCGGa--GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 149401 0.67 0.884036
Target:  5'- cGGCGccgccGCGUC--GCGUCUCGGCgGCGGc -3'
miRNA:   3'- -CUGCu----UGCAGcuCGCGGAGCUG-CGCC- -5'
24399 5' -56.9 NC_005264.1 + 157045 0.67 0.869417
Target:  5'- -uUGAACGccgUGGGCGCCUCGguggugcACGaCGGu -3'
miRNA:   3'- cuGCUUGCa--GCUCGCGGAGC-------UGC-GCC- -5'
24399 5' -56.9 NC_005264.1 + 125466 0.67 0.890019
Target:  5'- cGGCG-GCGUCGcuGGCGgagaacuCCUCGgcgGCGCGGc -3'
miRNA:   3'- -CUGCuUGCAGC--UCGC-------GGAGC---UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 97429 0.67 0.870133
Target:  5'- -gUGAGCGcugCGGGCGCCgc--CGCGGa -3'
miRNA:   3'- cuGCUUGCa--GCUCGCGGagcuGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.