miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 30374 0.67 0.884036
Target:  5'- cGGCGccgccGCGUC--GCGUCUCGGCgGCGGc -3'
miRNA:   3'- -CUGCu----UGCAGcuCGCGGAGCUG-CGCC- -5'
24399 5' -56.9 NC_005264.1 + 44244 0.67 0.884036
Target:  5'- cGGCGAA-GUCGcccaAGUGCUguUCGGCGCGu -3'
miRNA:   3'- -CUGCUUgCAGC----UCGCGG--AGCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 46229 0.67 0.884036
Target:  5'- cGACGAACGUguugCGAccggagaagaccGCGCCUgGGgGCGu -3'
miRNA:   3'- -CUGCUUGCA----GCU------------CGCGGAgCUgCGCc -5'
24399 5' -56.9 NC_005264.1 + 110870 0.67 0.870133
Target:  5'- aGAuCGAGCGUgaGcGCGCCgacaCGACGCGu -3'
miRNA:   3'- -CU-GCUUGCAg-CuCGCGGa---GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 6439 0.67 0.890019
Target:  5'- cGGCG-GCGUCGcuGGCGgagaacuCCUCGgcgGCGCGGc -3'
miRNA:   3'- -CUGCuUGCAGC--UCGC-------GGAGC---UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 122695 0.68 0.855427
Target:  5'- cGACGAugGgCGGcCGUCUCGGCgGCGa -3'
miRNA:   3'- -CUGCUugCaGCUcGCGGAGCUG-CGCc -5'
24399 5' -56.9 NC_005264.1 + 3668 0.68 0.855427
Target:  5'- cGACGAugGgCGGcCGUCUCGGCgGCGa -3'
miRNA:   3'- -CUGCUugCaGCUcGCGGAGCUG-CGCc -5'
24399 5' -56.9 NC_005264.1 + 107032 0.68 0.839961
Target:  5'- cGGCuGAAUGUUGAGuUGCuCUCGuagcCGCGGa -3'
miRNA:   3'- -CUG-CUUGCAGCUC-GCG-GAGCu---GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 66200 0.68 0.839961
Target:  5'- cGGCGGGCGgu--GCGCCUC--CGCGGc -3'
miRNA:   3'- -CUGCUUGCagcuCGCGGAGcuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 109271 0.68 0.839961
Target:  5'- ----cGCGUCGGGCGCgUCGuacCGCGa -3'
miRNA:   3'- cugcuUGCAGCUCGCGgAGCu--GCGCc -5'
24399 5' -56.9 NC_005264.1 + 51095 0.68 0.818799
Target:  5'- cGCGGuCGcCGGugcugcggucugcucGCGCCUCGACGCuGGc -3'
miRNA:   3'- cUGCUuGCaGCU---------------CGCGGAGCUGCG-CC- -5'
24399 5' -56.9 NC_005264.1 + 136908 0.68 0.855427
Target:  5'- -gUGAgccGCGUCGugcagugcAGcCGCUUCGugGCGGa -3'
miRNA:   3'- cuGCU---UGCAGC--------UC-GCGGAGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 151863 0.68 0.847786
Target:  5'- cGGCGAcACGUgGGGgGCgUCuuCGCGGg -3'
miRNA:   3'- -CUGCU-UGCAgCUCgCGgAGcuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 95477 0.68 0.850865
Target:  5'- aGCGAGCG-CGGGCGCUaCGuuuuccgcccucuuCGCGGc -3'
miRNA:   3'- cUGCUUGCaGCUCGCGGaGCu-------------GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 45404 0.68 0.847786
Target:  5'- cGGCGAACGU-GuGCGCCgaCGAUGCc- -3'
miRNA:   3'- -CUGCUUGCAgCuCGCGGa-GCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 22137 0.69 0.806092
Target:  5'- aACGAGCG-CGAcgcGCGCCUuagauugCGcCGCGGg -3'
miRNA:   3'- cUGCUUGCaGCU---CGCGGA-------GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 162193 0.69 0.798306
Target:  5'- gGGgGGGCGcgUGAGCcucuaucgcgcuGCCUgCGACGCGGg -3'
miRNA:   3'- -CUgCUUGCa-GCUCG------------CGGA-GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 131409 0.69 0.806092
Target:  5'- gGGCGGuccCGUCGAGCuauaagaucucccGCCcCGAgGCGGc -3'
miRNA:   3'- -CUGCUu--GCAGCUCG-------------CGGaGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 132299 0.69 0.78952
Target:  5'- cGACGAGgGUUc-GCGCCagCGAgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGcuCGCGGa-GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 25717 0.69 0.780601
Target:  5'- cGCGGGCGgcagCGGuGCGUaCUCGGuCGCGGa -3'
miRNA:   3'- cUGCUUGCa---GCU-CGCG-GAGCU-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.