Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24399 | 5' | -56.9 | NC_005264.1 | + | 68163 | 0.72 | 0.636447 |
Target: 5'- -gUGAACGUUGcGGCGCC-CGcCGCGGc -3' miRNA: 3'- cuGCUUGCAGC-UCGCGGaGCuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 96289 | 0.72 | 0.636447 |
Target: 5'- aGACGcGC-UCGuGCGCCUCGGCGUc- -3' miRNA: 3'- -CUGCuUGcAGCuCGCGGAGCUGCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 137291 | 0.72 | 0.636447 |
Target: 5'- gGACGAGCG-CGAcaaGCGCCUUGucCGCGc -3' miRNA: 3'- -CUGCUUGCaGCU---CGCGGAGCu-GCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 16627 | 0.72 | 0.646373 |
Target: 5'- cGGCGAucgacACGUCGAguGCGUCUCuGGUGCGGa -3' miRNA: 3'- -CUGCU-----UGCAGCU--CGCGGAG-CUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 33070 | 0.71 | 0.705438 |
Target: 5'- uGCG-ACGUCGcGGUGCC-CGGgGCGGa -3' miRNA: 3'- cUGCuUGCAGC-UCGCGGaGCUgCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 40185 | 0.71 | 0.695692 |
Target: 5'- cGACGAAUGUCaGcGCGCC-CGcccuCGCGGc -3' miRNA: 3'- -CUGCUUGCAG-CuCGCGGaGCu---GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 45130 | 0.71 | 0.685896 |
Target: 5'- cGugGGGCGaaGAaccagacagGCGCCaCGACGCGGa -3' miRNA: 3'- -CugCUUGCagCU---------CGCGGaGCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 53556 | 0.71 | 0.666186 |
Target: 5'- uGACGAAaGUCGuugucGCGCagagCGGCGCGGc -3' miRNA: 3'- -CUGCUUgCAGCu----CGCGga--GCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 152670 | 0.71 | 0.695692 |
Target: 5'- cGACGAcaagauacuCGcCGAG-GCCUgGACGCGGu -3' miRNA: 3'- -CUGCUu--------GCaGCUCgCGGAgCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 12892 | 0.71 | 0.665198 |
Target: 5'- gGACGGAcCGUCGAGCcgcccgGCCUCgcaguccucccccGACGCGu -3' miRNA: 3'- -CUGCUU-GCAGCUCG------CGGAG-------------CUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 131918 | 0.71 | 0.665198 |
Target: 5'- gGACGGAcCGUCGAGCcgcccgGCCUCgcaguccucccccGACGCGu -3' miRNA: 3'- -CUGCUU-GCAGCUCG------CGGAG-------------CUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 13352 | 0.71 | 0.695692 |
Target: 5'- gGAUGAACGUCGGG-GCCgagcCGGggccCGCGGc -3' miRNA: 3'- -CUGCUUGCAGCUCgCGGa---GCU----GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 159212 | 0.71 | 0.695692 |
Target: 5'- cGACGAAUGUCaGcGCGCC-CGcccuCGCGGc -3' miRNA: 3'- -CUGCUUGCAG-CuCGCGGaGCu---GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 132379 | 0.71 | 0.695692 |
Target: 5'- gGAUGAACGUCGGG-GCCgagcCGGggccCGCGGc -3' miRNA: 3'- -CUGCUUGCAGCUCgCGGa---GCU----GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 136356 | 0.71 | 0.685896 |
Target: 5'- uACGGGCGcUGGGCGCUgcCGGCGCGa -3' miRNA: 3'- cUGCUUGCaGCUCGCGGa-GCUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 43560 | 0.7 | 0.734292 |
Target: 5'- -cUGGAUGUCGAGCggcccGCCUCGcUGUGGc -3' miRNA: 3'- cuGCUUGCAGCUCG-----CGGAGCuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 7257 | 0.7 | 0.71416 |
Target: 5'- uGGCGGAgGUCG-GCGCCagGACgaagacgGCGGg -3' miRNA: 3'- -CUGCUUgCAGCuCGCGGagCUG-------CGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 126284 | 0.7 | 0.71416 |
Target: 5'- uGGCGGAgGUCG-GCGCCagGACgaagacgGCGGg -3' miRNA: 3'- -CUGCUUgCAGCuCGCGGagCUG-------CGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 105582 | 0.7 | 0.753125 |
Target: 5'- cGCGGGCuagggcUCGAGCGCCUCaaGACcGUGGu -3' miRNA: 3'- cUGCUUGc-----AGCUCGCGGAG--CUG-CGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 162587 | 0.7 | 0.734292 |
Target: 5'- -cUGGAUGUCGAGCggcccGCCUCGcUGUGGc -3' miRNA: 3'- cuGCUUGCAGCUCG-----CGGAGCuGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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