miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 114457 1.1 0.003048
Target:  5'- cGACGAACGUCGAGCGCCUCGACGCGGc -3'
miRNA:   3'- -CUGCUUGCAGCUCGCGGAGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 121517 0.81 0.230802
Target:  5'- cGACGAugGUCGGcGgGCCUCGcgcgacuucaGCGCGGg -3'
miRNA:   3'- -CUGCUugCAGCU-CgCGGAGC----------UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 2490 0.81 0.230802
Target:  5'- cGACGAugGUCGGcGgGCCUCGcgcgacuucaGCGCGGg -3'
miRNA:   3'- -CUGCUugCAGCU-CgCGGAGC----------UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 86974 0.77 0.365623
Target:  5'- gGACGAGacccuguuucuggaGUCGcAGCGCCUCGugGCGc -3'
miRNA:   3'- -CUGCUUg-------------CAGC-UCGCGGAGCugCGCc -5'
24399 5' -56.9 NC_005264.1 + 71875 0.76 0.428071
Target:  5'- cGACGGcACG-CGGGCGCC-CGACGCa- -3'
miRNA:   3'- -CUGCU-UGCaGCUCGCGGaGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 154807 0.75 0.463368
Target:  5'- aGGCGGAgGgcgCGguGGCGCCgUCGugGCGGg -3'
miRNA:   3'- -CUGCUUgCa--GC--UCGCGG-AGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 35781 0.75 0.463368
Target:  5'- aGGCGGAgGgcgCGguGGCGCCgUCGugGCGGg -3'
miRNA:   3'- -CUGCUUgCa--GC--UCGCGG-AGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 116409 0.75 0.48158
Target:  5'- aGGCcGACGUCGAGCGCagggCGGCGUGc -3'
miRNA:   3'- -CUGcUUGCAGCUCGCGga--GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 90955 0.74 0.490815
Target:  5'- cACGGuguuuGCGUCGGGCGCCcgCGugccguCGCGGa -3'
miRNA:   3'- cUGCU-----UGCAGCUCGCGGa-GCu-----GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 56232 0.74 0.509526
Target:  5'- uGGCGAGCGUCGcGCGgCUUuugucgagGugGCGGg -3'
miRNA:   3'- -CUGCUUGCAGCuCGCgGAG--------CugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 33869 0.74 0.509526
Target:  5'- --aGAACGUgGAGCGUccgCUCGAgGCGGc -3'
miRNA:   3'- cugCUUGCAgCUCGCG---GAGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 8355 0.74 0.518993
Target:  5'- gGGCGAcCGUCGcugaugcuuaccGGCGCCg-GACGCGGc -3'
miRNA:   3'- -CUGCUuGCAGC------------UCGCGGagCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 127382 0.74 0.518993
Target:  5'- gGGCGAcCGUCGcugaugcuuaccGGCGCCg-GACGCGGc -3'
miRNA:   3'- -CUGCUuGCAGC------------UCGCGGagCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 114172 0.74 0.518993
Target:  5'- uGGCGGAgGUCGAGUGUCggguaaCGuCGCGGa -3'
miRNA:   3'- -CUGCUUgCAGCUCGCGGa-----GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 34781 0.74 0.528529
Target:  5'- aGAUGAGCcgcucaugCGGGCgGCCaUCGACGCGGu -3'
miRNA:   3'- -CUGCUUGca------GCUCG-CGG-AGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 34235 0.73 0.567262
Target:  5'- aGACGGACGgguuUCGuccCGCCUCGugcGCGCGGu -3'
miRNA:   3'- -CUGCUUGC----AGCuc-GCGGAGC---UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 24490 0.73 0.567262
Target:  5'- uGCGAuagucGCGuUCGGGCGCCUUGuCGCGc -3'
miRNA:   3'- cUGCU-----UGC-AGCUCGCGGAGCuGCGCc -5'
24399 5' -56.9 NC_005264.1 + 7870 0.73 0.577067
Target:  5'- gGGCG-GCGUCG-GCGCCccaGAUGCGGc -3'
miRNA:   3'- -CUGCuUGCAGCuCGCGGag-CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 126896 0.73 0.577067
Target:  5'- gGGCG-GCGUCG-GCGCCccaGAUGCGGc -3'
miRNA:   3'- -CUGCuUGCAGCuCGCGGag-CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 25520 0.73 0.586908
Target:  5'- --aGGAUGUCaAGCGCCcauaaggCGGCGCGGa -3'
miRNA:   3'- cugCUUGCAGcUCGCGGa------GCUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.