miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 43560 0.7 0.734292
Target:  5'- -cUGGAUGUCGAGCggcccGCCUCGcUGUGGc -3'
miRNA:   3'- cuGCUUGCAGCUCG-----CGGAGCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 105582 0.7 0.753125
Target:  5'- cGCGGGCuagggcUCGAGCGCCUCaaGACcGUGGu -3'
miRNA:   3'- cUGCUUGc-----AGCUCGCGGAG--CUG-CGCC- -5'
24399 5' -56.9 NC_005264.1 + 22665 0.69 0.762396
Target:  5'- cACGAAgGaCGAGCGUCUCGcCGCu- -3'
miRNA:   3'- cUGCUUgCaGCUCGCGGAGCuGCGcc -5'
24399 5' -56.9 NC_005264.1 + 114293 0.69 0.762396
Target:  5'- cGACGAaggcgACGg-GGGCGCgCgggaCGACGCGGa -3'
miRNA:   3'- -CUGCU-----UGCagCUCGCG-Ga---GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 101382 0.69 0.771557
Target:  5'- aACGAACGgcgcUCGAGCaaCUCGGCGCcgaGGa -3'
miRNA:   3'- cUGCUUGC----AGCUCGcgGAGCUGCG---CC- -5'
24399 5' -56.9 NC_005264.1 + 43915 0.69 0.780601
Target:  5'- cGCGGccgucgccucgACGUCGAGgGCCaaGuACGCGGu -3'
miRNA:   3'- cUGCU-----------UGCAGCUCgCGGagC-UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 25717 0.69 0.780601
Target:  5'- cGCGGGCGgcagCGGuGCGUaCUCGGuCGCGGa -3'
miRNA:   3'- cUGCUUGCa---GCU-CGCG-GAGCU-GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 76081 0.69 0.780601
Target:  5'- cGCGAGCGUCGA-CGgCUCuacgGGCGCGa -3'
miRNA:   3'- cUGCUUGCAGCUcGCgGAG----CUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 13272 0.69 0.78952
Target:  5'- cGACGAGgGUUc-GCGCCagCGAgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGcuCGCGGa-GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 132299 0.69 0.78952
Target:  5'- cGACGAGgGUUc-GCGCCagCGAgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGcuCGCGGa-GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 126631 0.69 0.78952
Target:  5'- --aGAaaacGCGUCGAGCaCCUCGGgGgGGg -3'
miRNA:   3'- cugCU----UGCAGCUCGcGGAGCUgCgCC- -5'
24399 5' -56.9 NC_005264.1 + 43166 0.69 0.798306
Target:  5'- gGGgGGGCGcgUGAGCcucuaucgcgcuGCCUgCGACGCGGg -3'
miRNA:   3'- -CUgCUUGCa-GCUCG------------CGGA-GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 162193 0.69 0.798306
Target:  5'- gGGgGGGCGcgUGAGCcucuaucgcgcuGCCUgCGACGCGGg -3'
miRNA:   3'- -CUgCUUGCa-GCUCG------------CGGA-GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 12382 0.69 0.806092
Target:  5'- gGGCGGuccCGUCGAGCuauaagaucucccGCCcCGAgGCGGc -3'
miRNA:   3'- -CUGCUu--GCAGCUCG-------------CGGaGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 131409 0.69 0.806092
Target:  5'- gGGCGGuccCGUCGAGCuauaagaucucccGCCcCGAgGCGGc -3'
miRNA:   3'- -CUGCUu--GCAGCUCG-------------CGGaGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 22137 0.69 0.806092
Target:  5'- aACGAGCG-CGAcgcGCGCCUuagauugCGcCGCGGg -3'
miRNA:   3'- cUGCUUGCaGCU---CGCGGA-------GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 150428 0.69 0.80695
Target:  5'- --aGcACGUagCGGGcCGCCUCGGgGCGGg -3'
miRNA:   3'- cugCuUGCA--GCUC-GCGGAGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 112242 0.69 0.80695
Target:  5'- cGCGAACGUCcAGCGCCgggcugcucagCGcCGCGu -3'
miRNA:   3'- cUGCUUGCAGcUCGCGGa----------GCuGCGCc -5'
24399 5' -56.9 NC_005264.1 + 45912 0.69 0.80695
Target:  5'- cGACGGA-GcCGAGCaGCUaguuUCGAUGCGGu -3'
miRNA:   3'- -CUGCUUgCaGCUCG-CGG----AGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 31401 0.69 0.80695
Target:  5'- --aGcACGUagCGGGcCGCCUCGGgGCGGg -3'
miRNA:   3'- cugCuUGCA--GCUC-GCGGAGCUgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.