miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 127808 0.69 0.80695
Target:  5'- cGGCGGGCGUCGgccaggacggccAGCGCUccucuUCGAgcgccgcuCGCGGc -3'
miRNA:   3'- -CUGCUUGCAGC------------UCGCGG-----AGCU--------GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 150428 0.69 0.80695
Target:  5'- --aGcACGUagCGGGcCGCCUCGGgGCGGg -3'
miRNA:   3'- cugCuUGCA--GCUC-GCGGAGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 51095 0.68 0.818799
Target:  5'- cGCGGuCGcCGGugcugcggucugcucGCGCCUCGACGCuGGc -3'
miRNA:   3'- cUGCUuGCaGCU---------------CGCGGAGCUGCG-CC- -5'
24399 5' -56.9 NC_005264.1 + 109271 0.68 0.839961
Target:  5'- ----cGCGUCGGGCGCgUCGuacCGCGa -3'
miRNA:   3'- cugcuUGCAGCUCGCGgAGCu--GCGCc -5'
24399 5' -56.9 NC_005264.1 + 66200 0.68 0.839961
Target:  5'- cGGCGGGCGgu--GCGCCUC--CGCGGc -3'
miRNA:   3'- -CUGCUUGCagcuCGCGGAGcuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 107032 0.68 0.839961
Target:  5'- cGGCuGAAUGUUGAGuUGCuCUCGuagcCGCGGa -3'
miRNA:   3'- -CUG-CUUGCAGCUC-GCG-GAGCu---GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 45404 0.68 0.847786
Target:  5'- cGGCGAACGU-GuGCGCCgaCGAUGCc- -3'
miRNA:   3'- -CUGCUUGCAgCuCGCGGa-GCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 151863 0.68 0.847786
Target:  5'- cGGCGAcACGUgGGGgGCgUCuuCGCGGg -3'
miRNA:   3'- -CUGCU-UGCAgCUCgCGgAGcuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 95477 0.68 0.850865
Target:  5'- aGCGAGCG-CGGGCGCUaCGuuuuccgcccucuuCGCGGc -3'
miRNA:   3'- cUGCUUGCaGCUCGCGGaGCu-------------GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 122695 0.68 0.855427
Target:  5'- cGACGAugGgCGGcCGUCUCGGCgGCGa -3'
miRNA:   3'- -CUGCUugCaGCUcGCGGAGCUG-CGCc -5'
24399 5' -56.9 NC_005264.1 + 3668 0.68 0.855427
Target:  5'- cGACGAugGgCGGcCGUCUCGGCgGCGa -3'
miRNA:   3'- -CUGCUugCaGCUcGCGGAGCUG-CGCc -5'
24399 5' -56.9 NC_005264.1 + 136908 0.68 0.855427
Target:  5'- -gUGAgccGCGUCGugcagugcAGcCGCUUCGugGCGGa -3'
miRNA:   3'- cuGCU---UGCAGC--------UC-GCGGAGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 69591 0.67 0.862878
Target:  5'- cGCGAACGcgccgacgaGGGCGCCgccCGGCGUGa -3'
miRNA:   3'- cUGCUUGCag-------CUCGCGGa--GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 141461 0.67 0.862878
Target:  5'- aGGCGAGCGgCGGG-GCCUcuuuccaccggcCGAgGCGGc -3'
miRNA:   3'- -CUGCUUGCaGCUCgCGGA------------GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 142687 0.67 0.862878
Target:  5'- cGCGAuc-UUGGGCGCCggCGGCGCGc -3'
miRNA:   3'- cUGCUugcAGCUCGCGGa-GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 38018 0.67 0.869417
Target:  5'- -uUGAACGccgUGGGCGCCUCGguggugcACGaCGGu -3'
miRNA:   3'- cuGCUUGCa--GCUCGCGGAGC-------UGC-GCC- -5'
24399 5' -56.9 NC_005264.1 + 157045 0.67 0.869417
Target:  5'- -uUGAACGccgUGGGCGCCUCGguggugcACGaCGGu -3'
miRNA:   3'- cuGCUUGCa--GCUCGCGGAGC-------UGC-GCC- -5'
24399 5' -56.9 NC_005264.1 + 29795 0.67 0.870133
Target:  5'- cACGuagGCGUUGAuaugcuucCGCCUCGGCGCuGGa -3'
miRNA:   3'- cUGCu--UGCAGCUc-------GCGGAGCUGCG-CC- -5'
24399 5' -56.9 NC_005264.1 + 97429 0.67 0.870133
Target:  5'- -gUGAGCGcugCGGGCGCCgc--CGCGGa -3'
miRNA:   3'- cuGCUUGCa--GCUCGCGGagcuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 110870 0.67 0.870133
Target:  5'- aGAuCGAGCGUgaGcGCGCCgacaCGACGCGu -3'
miRNA:   3'- -CU-GCUUGCAg-CuCGCGGa---GCUGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.