miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 2490 0.81 0.230802
Target:  5'- cGACGAugGUCGGcGgGCCUCGcgcgacuucaGCGCGGg -3'
miRNA:   3'- -CUGCUugCAGCU-CgCGGAGC----------UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 3668 0.68 0.855427
Target:  5'- cGACGAugGgCGGcCGUCUCGGCgGCGa -3'
miRNA:   3'- -CUGCUugCaGCUcGCGGAGCUG-CGCc -5'
24399 5' -56.9 NC_005264.1 + 6439 0.67 0.890019
Target:  5'- cGGCG-GCGUCGcuGGCGgagaacuCCUCGgcgGCGCGGc -3'
miRNA:   3'- -CUGCuUGCAGC--UCGC-------GGAGC---UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 7059 0.66 0.903305
Target:  5'- cGGCGAcgGCGcCGgccGGCGCCgucgCGcUGCGGg -3'
miRNA:   3'- -CUGCU--UGCaGC---UCGCGGa---GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 7257 0.7 0.71416
Target:  5'- uGGCGGAgGUCG-GCGCCagGACgaagacgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGCuCGCGGagCUG-------CGCC- -5'
24399 5' -56.9 NC_005264.1 + 7870 0.73 0.577067
Target:  5'- gGGCG-GCGUCG-GCGCCccaGAUGCGGc -3'
miRNA:   3'- -CUGCuUGCAGCuCGCGGag-CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 8355 0.74 0.518993
Target:  5'- gGGCGAcCGUCGcugaugcuuaccGGCGCCg-GACGCGGc -3'
miRNA:   3'- -CUGCUuGCAGC------------UCGCGGagCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 8782 0.69 0.80695
Target:  5'- cGGCGGGCGUCGgccaggacggccAGCGCUccucuUCGAgcgccgcuCGCGGc -3'
miRNA:   3'- -CUGCUUGCAGC------------UCGCGG-----AGCU--------GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 9687 0.7 0.715126
Target:  5'- aGGCGGGC-UC--GCGCCUCGACGCu- -3'
miRNA:   3'- -CUGCUUGcAGcuCGCGGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 10394 0.66 0.914491
Target:  5'- cGACGGGgagggauCGUCGAGCGggaUCGugGCa- -3'
miRNA:   3'- -CUGCUU-------GCAGCUCGCgg-AGCugCGcc -5'
24399 5' -56.9 NC_005264.1 + 12382 0.69 0.806092
Target:  5'- gGGCGGuccCGUCGAGCuauaagaucucccGCCcCGAgGCGGc -3'
miRNA:   3'- -CUGCUu--GCAGCUCG-------------CGGaGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 12892 0.71 0.665198
Target:  5'- gGACGGAcCGUCGAGCcgcccgGCCUCgcaguccucccccGACGCGu -3'
miRNA:   3'- -CUGCUU-GCAGCUCG------CGGAG-------------CUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 13272 0.69 0.78952
Target:  5'- cGACGAGgGUUc-GCGCCagCGAgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGcuCGCGGa-GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 13352 0.71 0.695692
Target:  5'- gGAUGAACGUCGGG-GCCgagcCGGggccCGCGGc -3'
miRNA:   3'- -CUGCUUGCAGCUCgCGGa---GCU----GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 13965 0.66 0.909292
Target:  5'- cGACGAGgaGaCGAGCGa---GACGCGGg -3'
miRNA:   3'- -CUGCUUg-CaGCUCGCggagCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 16627 0.72 0.646373
Target:  5'- cGGCGAucgacACGUCGAguGCGUCUCuGGUGCGGa -3'
miRNA:   3'- -CUGCU-----UGCAGCU--CGCGGAG-CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 19420 0.67 0.877187
Target:  5'- aGGCGAgGCGcCGGGUgugGCCgcggGGCGCGGg -3'
miRNA:   3'- -CUGCU-UGCaGCUCG---CGGag--CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 19886 0.66 0.920599
Target:  5'- cGCGGccGCGcuagccauuUCGGGUGCUUUGugGUGGc -3'
miRNA:   3'- cUGCU--UGC---------AGCUCGCGGAGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 22137 0.69 0.806092
Target:  5'- aACGAGCG-CGAcgcGCGCCUuagauugCGcCGCGGg -3'
miRNA:   3'- cUGCUUGCaGCU---CGCGGA-------GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 22665 0.69 0.762396
Target:  5'- cACGAAgGaCGAGCGUCUCGcCGCu- -3'
miRNA:   3'- cUGCUUgCaGCUCGCGGAGCuGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.