miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 45404 0.68 0.847786
Target:  5'- cGGCGAACGU-GuGCGCCgaCGAUGCc- -3'
miRNA:   3'- -CUGCUUGCAgCuCGCGGa-GCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 45912 0.69 0.80695
Target:  5'- cGACGGA-GcCGAGCaGCUaguuUCGAUGCGGu -3'
miRNA:   3'- -CUGCUUgCaGCUCG-CGG----AGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 46229 0.67 0.884036
Target:  5'- cGACGAACGUguugCGAccggagaagaccGCGCCUgGGgGCGu -3'
miRNA:   3'- -CUGCUUGCA----GCU------------CGCGGAgCUgCGCc -5'
24399 5' -56.9 NC_005264.1 + 48389 0.66 0.915057
Target:  5'- aGACugGGGCGUCGGGCggcgGCCagGA-GCGGg -3'
miRNA:   3'- -CUG--CUUGCAGCUCG----CGGagCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 51095 0.68 0.818799
Target:  5'- cGCGGuCGcCGGugcugcggucugcucGCGCCUCGACGCuGGc -3'
miRNA:   3'- cUGCUuGCaGCU---------------CGCGGAGCUGCG-CC- -5'
24399 5' -56.9 NC_005264.1 + 53556 0.71 0.666186
Target:  5'- uGACGAAaGUCGuugucGCGCagagCGGCGCGGc -3'
miRNA:   3'- -CUGCUUgCAGCu----CGCGga--GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 54589 0.66 0.897098
Target:  5'- -gUGAGCGUgGucaacGCcgGCCUCGGCGCGu -3'
miRNA:   3'- cuGCUUGCAgCu----CG--CGGAGCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 55156 0.66 0.903305
Target:  5'- uGGCGcAGCGUau-GCgGCCUCugGGCGCGGc -3'
miRNA:   3'- -CUGC-UUGCAgcuCG-CGGAG--CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 56232 0.74 0.509526
Target:  5'- uGGCGAGCGUCGcGCGgCUUuugucgagGugGCGGg -3'
miRNA:   3'- -CUGCUUGCAGCuCGCgGAG--------CugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 56314 0.66 0.920599
Target:  5'- cGACGAACcgauaGcCGuuCGCgUCGACGUGGc -3'
miRNA:   3'- -CUGCUUG-----CaGCucGCGgAGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 56595 0.66 0.920599
Target:  5'- aGCaGGCG-CGAGCGCCUCGcgacCGCu- -3'
miRNA:   3'- cUGcUUGCaGCUCGCGGAGCu---GCGcc -5'
24399 5' -56.9 NC_005264.1 + 61240 0.66 0.911625
Target:  5'- uGGCGAugGcgcgcuccagcucaCGGcGCGCCUCGGCGUa- -3'
miRNA:   3'- -CUGCUugCa-------------GCU-CGCGGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 66200 0.68 0.839961
Target:  5'- cGGCGGGCGgu--GCGCCUC--CGCGGc -3'
miRNA:   3'- -CUGCUUGCagcuCGCGGAGcuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 67176 0.66 0.903305
Target:  5'- gGugGAugG-CGgccugcAGCGCUaUGACGCGGc -3'
miRNA:   3'- -CugCUugCaGC------UCGCGGaGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 67359 0.66 0.91896
Target:  5'- gGGCGGaaaacguagcgcccGCGcUCGcuGCGCCcgcCGGCGCGGu -3'
miRNA:   3'- -CUGCU--------------UGC-AGCu-CGCGGa--GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 68163 0.72 0.636447
Target:  5'- -gUGAACGUUGcGGCGCC-CGcCGCGGc -3'
miRNA:   3'- cuGCUUGCAGC-UCGCGGaGCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 69197 0.66 0.925916
Target:  5'- cGACG-AUGUaucGCGCUUgGAUGCGGa -3'
miRNA:   3'- -CUGCuUGCAgcuCGCGGAgCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 69591 0.67 0.862878
Target:  5'- cGCGAACGcgccgacgaGGGCGCCgccCGGCGUGa -3'
miRNA:   3'- cUGCUUGCag-------CUCGCGGa--GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 71875 0.76 0.428071
Target:  5'- cGACGGcACG-CGGGCGCC-CGACGCa- -3'
miRNA:   3'- -CUGCU-UGCaGCUCGCGGaGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 75680 0.67 0.884036
Target:  5'- uGCGGA-GUCGcgcgcAGCGCCgucuuUCGGCGCGa -3'
miRNA:   3'- cUGCUUgCAGC-----UCGCGG-----AGCUGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.