Results 61 - 80 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24399 | 5' | -56.9 | NC_005264.1 | + | 76081 | 0.69 | 0.780601 |
Target: 5'- cGCGAGCGUCGA-CGgCUCuacgGGCGCGa -3' miRNA: 3'- cUGCUUGCAGCUcGCgGAG----CUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 86974 | 0.77 | 0.365623 |
Target: 5'- gGACGAGacccuguuucuggaGUCGcAGCGCCUCGugGCGc -3' miRNA: 3'- -CUGCUUg-------------CAGC-UCGCGGAGCugCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 88095 | 0.67 | 0.890674 |
Target: 5'- -gUGcGCGUCGggcacAGCGUCggcCGGCGCGGu -3' miRNA: 3'- cuGCuUGCAGC-----UCGCGGa--GCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 90955 | 0.74 | 0.490815 |
Target: 5'- cACGGuguuuGCGUCGGGCGCCcgCGugccguCGCGGa -3' miRNA: 3'- cUGCU-----UGCAGCUCGCGGa-GCu-----GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 95360 | 0.66 | 0.923816 |
Target: 5'- cGACGGGCGgCGcGUGCCgccaaacugccaGGCGUGGg -3' miRNA: 3'- -CUGCUUGCaGCuCGCGGag----------CUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 95477 | 0.68 | 0.850865 |
Target: 5'- aGCGAGCG-CGGGCGCUaCGuuuuccgcccucuuCGCGGc -3' miRNA: 3'- cUGCUUGCaGCUCGCGGaGCu-------------GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 96289 | 0.72 | 0.636447 |
Target: 5'- aGACGcGC-UCGuGCGCCUCGGCGUc- -3' miRNA: 3'- -CUGCuUGcAGCuCGCGGAGCUGCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 97429 | 0.67 | 0.870133 |
Target: 5'- -gUGAGCGcugCGGGCGCCgc--CGCGGa -3' miRNA: 3'- cuGCUUGCa--GCUCGCGGagcuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 99971 | 0.66 | 0.925916 |
Target: 5'- aGACGAG-GcCaAGCGCCUCGugGaCGa -3' miRNA: 3'- -CUGCUUgCaGcUCGCGGAGCugC-GCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 100837 | 0.67 | 0.877187 |
Target: 5'- gGACG-ACGgCGAGUucucCCUCGACGCa- -3' miRNA: 3'- -CUGCuUGCaGCUCGc---GGAGCUGCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 101382 | 0.69 | 0.771557 |
Target: 5'- aACGAACGgcgcUCGAGCaaCUCGGCGCcgaGGa -3' miRNA: 3'- cUGCUUGC----AGCUCGcgGAGCUGCG---CC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 103691 | 0.67 | 0.877187 |
Target: 5'- gGGCGAGggggaaGUUGAGgGCCaguggagcggCGGCGCGGc -3' miRNA: 3'- -CUGCUUg-----CAGCUCgCGGa---------GCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 105582 | 0.7 | 0.753125 |
Target: 5'- cGCGGGCuagggcUCGAGCGCCUCaaGACcGUGGu -3' miRNA: 3'- cUGCUUGc-----AGCUCGCGGAG--CUG-CGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 107032 | 0.68 | 0.839961 |
Target: 5'- cGGCuGAAUGUUGAGuUGCuCUCGuagcCGCGGa -3' miRNA: 3'- -CUG-CUUGCAGCUC-GCG-GAGCu---GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 109271 | 0.68 | 0.839961 |
Target: 5'- ----cGCGUCGGGCGCgUCGuacCGCGa -3' miRNA: 3'- cugcuUGCAGCUCGCGgAGCu--GCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 110870 | 0.67 | 0.870133 |
Target: 5'- aGAuCGAGCGUgaGcGCGCCgacaCGACGCGu -3' miRNA: 3'- -CU-GCUUGCAg-CuCGCGGa---GCUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 112242 | 0.69 | 0.80695 |
Target: 5'- cGCGAACGUCcAGCGCCgggcugcucagCGcCGCGu -3' miRNA: 3'- cUGCUUGCAGcUCGCGGa----------GCuGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 114172 | 0.74 | 0.518993 |
Target: 5'- uGGCGGAgGUCGAGUGUCggguaaCGuCGCGGa -3' miRNA: 3'- -CUGCUUgCAGCUCGCGGa-----GCuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 114293 | 0.69 | 0.762396 |
Target: 5'- cGACGAaggcgACGg-GGGCGCgCgggaCGACGCGGa -3' miRNA: 3'- -CUGCU-----UGCagCUCGCG-Ga---GCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 114457 | 1.1 | 0.003048 |
Target: 5'- cGACGAACGUCGAGCGCCUCGACGCGGc -3' miRNA: 3'- -CUGCUUGCAGCUCGCGGAGCUGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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