Results 81 - 100 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24399 | 5' | -56.9 | NC_005264.1 | + | 116409 | 0.75 | 0.48158 |
Target: 5'- aGGCcGACGUCGAGCGCagggCGGCGUGc -3' miRNA: 3'- -CUGcUUGCAGCUCGCGga--GCUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 116559 | 0.66 | 0.909292 |
Target: 5'- aGGCG-GCGUCGAuGCGCagCUCGGCGa-- -3' miRNA: 3'- -CUGCuUGCAGCU-CGCG--GAGCUGCgcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 120400 | 0.67 | 0.890674 |
Target: 5'- -uCGAGCG-CGAGUGCCgcagCGccgaACGCGa -3' miRNA: 3'- cuGCUUGCaGCUCGCGGa---GC----UGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 121517 | 0.81 | 0.230802 |
Target: 5'- cGACGAugGUCGGcGgGCCUCGcgcgacuucaGCGCGGg -3' miRNA: 3'- -CUGCUugCAGCU-CgCGGAGC----------UGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 122695 | 0.68 | 0.855427 |
Target: 5'- cGACGAugGgCGGcCGUCUCGGCgGCGa -3' miRNA: 3'- -CUGCUugCaGCUcGCGGAGCUG-CGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 125466 | 0.67 | 0.890019 |
Target: 5'- cGGCG-GCGUCGcuGGCGgagaacuCCUCGgcgGCGCGGc -3' miRNA: 3'- -CUGCuUGCAGC--UCGC-------GGAGC---UGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 126086 | 0.66 | 0.903305 |
Target: 5'- cGGCGAcgGCGcCGgccGGCGCCgucgCGcUGCGGg -3' miRNA: 3'- -CUGCU--UGCaGC---UCGCGGa---GCuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 126284 | 0.7 | 0.71416 |
Target: 5'- uGGCGGAgGUCG-GCGCCagGACgaagacgGCGGg -3' miRNA: 3'- -CUGCUUgCAGCuCGCGGagCUG-------CGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 126631 | 0.69 | 0.78952 |
Target: 5'- --aGAaaacGCGUCGAGCaCCUCGGgGgGGg -3' miRNA: 3'- cugCU----UGCAGCUCGcGGAGCUgCgCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 126896 | 0.73 | 0.577067 |
Target: 5'- gGGCG-GCGUCG-GCGCCccaGAUGCGGc -3' miRNA: 3'- -CUGCuUGCAGCuCGCGGag-CUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 127382 | 0.74 | 0.518993 |
Target: 5'- gGGCGAcCGUCGcugaugcuuaccGGCGCCg-GACGCGGc -3' miRNA: 3'- -CUGCUuGCAGC------------UCGCGGagCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 127808 | 0.69 | 0.80695 |
Target: 5'- cGGCGGGCGUCGgccaggacggccAGCGCUccucuUCGAgcgccgcuCGCGGc -3' miRNA: 3'- -CUGCUUGCAGC------------UCGCGG-----AGCU--------GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 128714 | 0.7 | 0.715126 |
Target: 5'- aGGCGGGC-UC--GCGCCUCGACGCu- -3' miRNA: 3'- -CUGCUUGcAGcuCGCGGAGCUGCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 129421 | 0.66 | 0.914491 |
Target: 5'- cGACGGGgagggauCGUCGAGCGggaUCGugGCa- -3' miRNA: 3'- -CUGCUU-------GCAGCUCGCgg-AGCugCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 131409 | 0.69 | 0.806092 |
Target: 5'- gGGCGGuccCGUCGAGCuauaagaucucccGCCcCGAgGCGGc -3' miRNA: 3'- -CUGCUu--GCAGCUCG-------------CGGaGCUgCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 131918 | 0.71 | 0.665198 |
Target: 5'- gGACGGAcCGUCGAGCcgcccgGCCUCgcaguccucccccGACGCGu -3' miRNA: 3'- -CUGCUU-GCAGCUCG------CGGAG-------------CUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 132299 | 0.69 | 0.78952 |
Target: 5'- cGACGAGgGUUc-GCGCCagCGAgGCGGg -3' miRNA: 3'- -CUGCUUgCAGcuCGCGGa-GCUgCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 132379 | 0.71 | 0.695692 |
Target: 5'- gGAUGAACGUCGGG-GCCgagcCGGggccCGCGGc -3' miRNA: 3'- -CUGCUUGCAGCUCgCGGa---GCU----GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 136356 | 0.71 | 0.685896 |
Target: 5'- uACGGGCGcUGGGCGCUgcCGGCGCGa -3' miRNA: 3'- cUGCUUGCaGCUCGCGGa-GCUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 136908 | 0.68 | 0.855427 |
Target: 5'- -gUGAgccGCGUCGugcagugcAGcCGCUUCGugGCGGa -3' miRNA: 3'- cuGCU---UGCAGC--------UC-GCGGAGCugCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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