miRNA display CGI


Results 101 - 117 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 137291 0.72 0.636447
Target:  5'- gGACGAGCG-CGAcaaGCGCCUUGucCGCGc -3'
miRNA:   3'- -CUGCUUGCaGCU---CGCGGAGCu-GCGCc -5'
24399 5' -56.9 NC_005264.1 + 141461 0.67 0.862878
Target:  5'- aGGCGAGCGgCGGG-GCCUcuuuccaccggcCGAgGCGGc -3'
miRNA:   3'- -CUGCUUGCaGCUCgCGGA------------GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 142687 0.67 0.862878
Target:  5'- cGCGAuc-UUGGGCGCCggCGGCGCGc -3'
miRNA:   3'- cUGCUugcAGCUCGCGGa-GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 144081 0.66 0.925916
Target:  5'- aGACGGaagAUGUCGGagcGCGCCUCGucuuuCuCGGa -3'
miRNA:   3'- -CUGCU---UGCAGCU---CGCGGAGCu----GcGCC- -5'
24399 5' -56.9 NC_005264.1 + 144533 0.66 0.920599
Target:  5'- aGACGGACGgccucGCGCaaCGACGaCGGa -3'
miRNA:   3'- -CUGCUUGCagcu-CGCGgaGCUGC-GCC- -5'
24399 5' -56.9 NC_005264.1 + 146833 0.66 0.920599
Target:  5'- cGGCGGuCGUCGccUGCCaUGAUGCGGc -3'
miRNA:   3'- -CUGCUuGCAGCucGCGGaGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 149401 0.67 0.884036
Target:  5'- cGGCGccgccGCGUC--GCGUCUCGGCgGCGGc -3'
miRNA:   3'- -CUGCu----UGCAGcuCGCGGAGCUG-CGCC- -5'
24399 5' -56.9 NC_005264.1 + 150428 0.69 0.80695
Target:  5'- --aGcACGUagCGGGcCGCCUCGGgGCGGg -3'
miRNA:   3'- cugCuUGCA--GCUC-GCGGAGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 150692 0.67 0.884036
Target:  5'- cGCGAACGcgCGAGgcaggGCuCUCGGCGgGGc -3'
miRNA:   3'- cUGCUUGCa-GCUCg----CG-GAGCUGCgCC- -5'
24399 5' -56.9 NC_005264.1 + 151863 0.68 0.847786
Target:  5'- cGGCGAcACGUgGGGgGCgUCuuCGCGGg -3'
miRNA:   3'- -CUGCU-UGCAgCUCgCGgAGcuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 152290 0.66 0.903305
Target:  5'- cGGCGAACGcgCGAuccGCGCCccugagggCGGCGCc- -3'
miRNA:   3'- -CUGCUUGCa-GCU---CGCGGa-------GCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 152670 0.71 0.695692
Target:  5'- cGACGAcaagauacuCGcCGAG-GCCUgGACGCGGu -3'
miRNA:   3'- -CUGCUu--------GCaGCUCgCGGAgCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 154807 0.75 0.463368
Target:  5'- aGGCGGAgGgcgCGguGGCGCCgUCGugGCGGg -3'
miRNA:   3'- -CUGCUUgCa--GC--UCGCGG-AGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 157045 0.67 0.869417
Target:  5'- -uUGAACGccgUGGGCGCCUCGguggugcACGaCGGu -3'
miRNA:   3'- cuGCUUGCa--GCUCGCGGAGC-------UGC-GCC- -5'
24399 5' -56.9 NC_005264.1 + 159212 0.71 0.695692
Target:  5'- cGACGAAUGUCaGcGCGCC-CGcccuCGCGGc -3'
miRNA:   3'- -CUGCUUGCAG-CuCGCGGaGCu---GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 162193 0.69 0.798306
Target:  5'- gGGgGGGCGcgUGAGCcucuaucgcgcuGCCUgCGACGCGGg -3'
miRNA:   3'- -CUgCUUGCa-GCUCG------------CGGA-GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 162587 0.7 0.734292
Target:  5'- -cUGGAUGUCGAGCggcccGCCUCGcUGUGGc -3'
miRNA:   3'- cuGCUUGCAGCUCG-----CGGAGCuGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.