Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24399 | 5' | -56.9 | NC_005264.1 | + | 162587 | 0.7 | 0.734292 |
Target: 5'- -cUGGAUGUCGAGCggcccGCCUCGcUGUGGc -3' miRNA: 3'- cuGCUUGCAGCUCG-----CGGAGCuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 162193 | 0.69 | 0.798306 |
Target: 5'- gGGgGGGCGcgUGAGCcucuaucgcgcuGCCUgCGACGCGGg -3' miRNA: 3'- -CUgCUUGCa-GCUCG------------CGGA-GCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 159212 | 0.71 | 0.695692 |
Target: 5'- cGACGAAUGUCaGcGCGCC-CGcccuCGCGGc -3' miRNA: 3'- -CUGCUUGCAG-CuCGCGGaGCu---GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 157045 | 0.67 | 0.869417 |
Target: 5'- -uUGAACGccgUGGGCGCCUCGguggugcACGaCGGu -3' miRNA: 3'- cuGCUUGCa--GCUCGCGGAGC-------UGC-GCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 154807 | 0.75 | 0.463368 |
Target: 5'- aGGCGGAgGgcgCGguGGCGCCgUCGugGCGGg -3' miRNA: 3'- -CUGCUUgCa--GC--UCGCGG-AGCugCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 152670 | 0.71 | 0.695692 |
Target: 5'- cGACGAcaagauacuCGcCGAG-GCCUgGACGCGGu -3' miRNA: 3'- -CUGCUu--------GCaGCUCgCGGAgCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 152290 | 0.66 | 0.903305 |
Target: 5'- cGGCGAACGcgCGAuccGCGCCccugagggCGGCGCc- -3' miRNA: 3'- -CUGCUUGCa-GCU---CGCGGa-------GCUGCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 151863 | 0.68 | 0.847786 |
Target: 5'- cGGCGAcACGUgGGGgGCgUCuuCGCGGg -3' miRNA: 3'- -CUGCU-UGCAgCUCgCGgAGcuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 150692 | 0.67 | 0.884036 |
Target: 5'- cGCGAACGcgCGAGgcaggGCuCUCGGCGgGGc -3' miRNA: 3'- cUGCUUGCa-GCUCg----CG-GAGCUGCgCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 150428 | 0.69 | 0.80695 |
Target: 5'- --aGcACGUagCGGGcCGCCUCGGgGCGGg -3' miRNA: 3'- cugCuUGCA--GCUC-GCGGAGCUgCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 149401 | 0.67 | 0.884036 |
Target: 5'- cGGCGccgccGCGUC--GCGUCUCGGCgGCGGc -3' miRNA: 3'- -CUGCu----UGCAGcuCGCGGAGCUG-CGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 146833 | 0.66 | 0.920599 |
Target: 5'- cGGCGGuCGUCGccUGCCaUGAUGCGGc -3' miRNA: 3'- -CUGCUuGCAGCucGCGGaGCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 144533 | 0.66 | 0.920599 |
Target: 5'- aGACGGACGgccucGCGCaaCGACGaCGGa -3' miRNA: 3'- -CUGCUUGCagcu-CGCGgaGCUGC-GCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 144081 | 0.66 | 0.925916 |
Target: 5'- aGACGGaagAUGUCGGagcGCGCCUCGucuuuCuCGGa -3' miRNA: 3'- -CUGCU---UGCAGCU---CGCGGAGCu----GcGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 142687 | 0.67 | 0.862878 |
Target: 5'- cGCGAuc-UUGGGCGCCggCGGCGCGc -3' miRNA: 3'- cUGCUugcAGCUCGCGGa-GCUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 141461 | 0.67 | 0.862878 |
Target: 5'- aGGCGAGCGgCGGG-GCCUcuuuccaccggcCGAgGCGGc -3' miRNA: 3'- -CUGCUUGCaGCUCgCGGA------------GCUgCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 137291 | 0.72 | 0.636447 |
Target: 5'- gGACGAGCG-CGAcaaGCGCCUUGucCGCGc -3' miRNA: 3'- -CUGCUUGCaGCU---CGCGGAGCu-GCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 136908 | 0.68 | 0.855427 |
Target: 5'- -gUGAgccGCGUCGugcagugcAGcCGCUUCGugGCGGa -3' miRNA: 3'- cuGCU---UGCAGC--------UC-GCGGAGCugCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 136356 | 0.71 | 0.685896 |
Target: 5'- uACGGGCGcUGGGCGCUgcCGGCGCGa -3' miRNA: 3'- cUGCUUGCaGCUCGCGGa-GCUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 132379 | 0.71 | 0.695692 |
Target: 5'- gGAUGAACGUCGGG-GCCgagcCGGggccCGCGGc -3' miRNA: 3'- -CUGCUUGCAGCUCgCGGa---GCU----GCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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