miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 132299 0.69 0.78952
Target:  5'- cGACGAGgGUUc-GCGCCagCGAgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGcuCGCGGa-GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 131918 0.71 0.665198
Target:  5'- gGACGGAcCGUCGAGCcgcccgGCCUCgcaguccucccccGACGCGu -3'
miRNA:   3'- -CUGCUU-GCAGCUCG------CGGAG-------------CUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 131409 0.69 0.806092
Target:  5'- gGGCGGuccCGUCGAGCuauaagaucucccGCCcCGAgGCGGc -3'
miRNA:   3'- -CUGCUu--GCAGCUCG-------------CGGaGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 129421 0.66 0.914491
Target:  5'- cGACGGGgagggauCGUCGAGCGggaUCGugGCa- -3'
miRNA:   3'- -CUGCUU-------GCAGCUCGCgg-AGCugCGcc -5'
24399 5' -56.9 NC_005264.1 + 128714 0.7 0.715126
Target:  5'- aGGCGGGC-UC--GCGCCUCGACGCu- -3'
miRNA:   3'- -CUGCUUGcAGcuCGCGGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 127808 0.69 0.80695
Target:  5'- cGGCGGGCGUCGgccaggacggccAGCGCUccucuUCGAgcgccgcuCGCGGc -3'
miRNA:   3'- -CUGCUUGCAGC------------UCGCGG-----AGCU--------GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 127382 0.74 0.518993
Target:  5'- gGGCGAcCGUCGcugaugcuuaccGGCGCCg-GACGCGGc -3'
miRNA:   3'- -CUGCUuGCAGC------------UCGCGGagCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 126896 0.73 0.577067
Target:  5'- gGGCG-GCGUCG-GCGCCccaGAUGCGGc -3'
miRNA:   3'- -CUGCuUGCAGCuCGCGGag-CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 126631 0.69 0.78952
Target:  5'- --aGAaaacGCGUCGAGCaCCUCGGgGgGGg -3'
miRNA:   3'- cugCU----UGCAGCUCGcGGAGCUgCgCC- -5'
24399 5' -56.9 NC_005264.1 + 126284 0.7 0.71416
Target:  5'- uGGCGGAgGUCG-GCGCCagGACgaagacgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGCuCGCGGagCUG-------CGCC- -5'
24399 5' -56.9 NC_005264.1 + 126086 0.66 0.903305
Target:  5'- cGGCGAcgGCGcCGgccGGCGCCgucgCGcUGCGGg -3'
miRNA:   3'- -CUGCU--UGCaGC---UCGCGGa---GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 125466 0.67 0.890019
Target:  5'- cGGCG-GCGUCGcuGGCGgagaacuCCUCGgcgGCGCGGc -3'
miRNA:   3'- -CUGCuUGCAGC--UCGC-------GGAGC---UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 122695 0.68 0.855427
Target:  5'- cGACGAugGgCGGcCGUCUCGGCgGCGa -3'
miRNA:   3'- -CUGCUugCaGCUcGCGGAGCUG-CGCc -5'
24399 5' -56.9 NC_005264.1 + 121517 0.81 0.230802
Target:  5'- cGACGAugGUCGGcGgGCCUCGcgcgacuucaGCGCGGg -3'
miRNA:   3'- -CUGCUugCAGCU-CgCGGAGC----------UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 120400 0.67 0.890674
Target:  5'- -uCGAGCG-CGAGUGCCgcagCGccgaACGCGa -3'
miRNA:   3'- cuGCUUGCaGCUCGCGGa---GC----UGCGCc -5'
24399 5' -56.9 NC_005264.1 + 116559 0.66 0.909292
Target:  5'- aGGCG-GCGUCGAuGCGCagCUCGGCGa-- -3'
miRNA:   3'- -CUGCuUGCAGCU-CGCG--GAGCUGCgcc -5'
24399 5' -56.9 NC_005264.1 + 116409 0.75 0.48158
Target:  5'- aGGCcGACGUCGAGCGCagggCGGCGUGc -3'
miRNA:   3'- -CUGcUUGCAGCUCGCGga--GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 114457 1.1 0.003048
Target:  5'- cGACGAACGUCGAGCGCCUCGACGCGGc -3'
miRNA:   3'- -CUGCUUGCAGCUCGCGGAGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 114293 0.69 0.762396
Target:  5'- cGACGAaggcgACGg-GGGCGCgCgggaCGACGCGGa -3'
miRNA:   3'- -CUGCU-----UGCagCUCGCG-Ga---GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 114172 0.74 0.518993
Target:  5'- uGGCGGAgGUCGAGUGUCggguaaCGuCGCGGa -3'
miRNA:   3'- -CUGCUUgCAGCUCGCGGa-----GCuGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.