miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 112242 0.69 0.80695
Target:  5'- cGCGAACGUCcAGCGCCgggcugcucagCGcCGCGu -3'
miRNA:   3'- cUGCUUGCAGcUCGCGGa----------GCuGCGCc -5'
24399 5' -56.9 NC_005264.1 + 110870 0.67 0.870133
Target:  5'- aGAuCGAGCGUgaGcGCGCCgacaCGACGCGu -3'
miRNA:   3'- -CU-GCUUGCAg-CuCGCGGa---GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 109271 0.68 0.839961
Target:  5'- ----cGCGUCGGGCGCgUCGuacCGCGa -3'
miRNA:   3'- cugcuUGCAGCUCGCGgAGCu--GCGCc -5'
24399 5' -56.9 NC_005264.1 + 107032 0.68 0.839961
Target:  5'- cGGCuGAAUGUUGAGuUGCuCUCGuagcCGCGGa -3'
miRNA:   3'- -CUG-CUUGCAGCUC-GCG-GAGCu---GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 105582 0.7 0.753125
Target:  5'- cGCGGGCuagggcUCGAGCGCCUCaaGACcGUGGu -3'
miRNA:   3'- cUGCUUGc-----AGCUCGCGGAG--CUG-CGCC- -5'
24399 5' -56.9 NC_005264.1 + 103691 0.67 0.877187
Target:  5'- gGGCGAGggggaaGUUGAGgGCCaguggagcggCGGCGCGGc -3'
miRNA:   3'- -CUGCUUg-----CAGCUCgCGGa---------GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 101382 0.69 0.771557
Target:  5'- aACGAACGgcgcUCGAGCaaCUCGGCGCcgaGGa -3'
miRNA:   3'- cUGCUUGC----AGCUCGcgGAGCUGCG---CC- -5'
24399 5' -56.9 NC_005264.1 + 100837 0.67 0.877187
Target:  5'- gGACG-ACGgCGAGUucucCCUCGACGCa- -3'
miRNA:   3'- -CUGCuUGCaGCUCGc---GGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 99971 0.66 0.925916
Target:  5'- aGACGAG-GcCaAGCGCCUCGugGaCGa -3'
miRNA:   3'- -CUGCUUgCaGcUCGCGGAGCugC-GCc -5'
24399 5' -56.9 NC_005264.1 + 97429 0.67 0.870133
Target:  5'- -gUGAGCGcugCGGGCGCCgc--CGCGGa -3'
miRNA:   3'- cuGCUUGCa--GCUCGCGGagcuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 96289 0.72 0.636447
Target:  5'- aGACGcGC-UCGuGCGCCUCGGCGUc- -3'
miRNA:   3'- -CUGCuUGcAGCuCGCGGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 95477 0.68 0.850865
Target:  5'- aGCGAGCG-CGGGCGCUaCGuuuuccgcccucuuCGCGGc -3'
miRNA:   3'- cUGCUUGCaGCUCGCGGaGCu-------------GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 95360 0.66 0.923816
Target:  5'- cGACGGGCGgCGcGUGCCgccaaacugccaGGCGUGGg -3'
miRNA:   3'- -CUGCUUGCaGCuCGCGGag----------CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 90955 0.74 0.490815
Target:  5'- cACGGuguuuGCGUCGGGCGCCcgCGugccguCGCGGa -3'
miRNA:   3'- cUGCU-----UGCAGCUCGCGGa-GCu-----GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 88095 0.67 0.890674
Target:  5'- -gUGcGCGUCGggcacAGCGUCggcCGGCGCGGu -3'
miRNA:   3'- cuGCuUGCAGC-----UCGCGGa--GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 86974 0.77 0.365623
Target:  5'- gGACGAGacccuguuucuggaGUCGcAGCGCCUCGugGCGc -3'
miRNA:   3'- -CUGCUUg-------------CAGC-UCGCGGAGCugCGCc -5'
24399 5' -56.9 NC_005264.1 + 76081 0.69 0.780601
Target:  5'- cGCGAGCGUCGA-CGgCUCuacgGGCGCGa -3'
miRNA:   3'- cUGCUUGCAGCUcGCgGAG----CUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 75680 0.67 0.884036
Target:  5'- uGCGGA-GUCGcgcgcAGCGCCgucuuUCGGCGCGa -3'
miRNA:   3'- cUGCUUgCAGC-----UCGCGG-----AGCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 71875 0.76 0.428071
Target:  5'- cGACGGcACG-CGGGCGCC-CGACGCa- -3'
miRNA:   3'- -CUGCU-UGCaGCUCGCGGaGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 69591 0.67 0.862878
Target:  5'- cGCGAACGcgccgacgaGGGCGCCgccCGGCGUGa -3'
miRNA:   3'- cUGCUUGCag-------CUCGCGGa--GCUGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.