Results 61 - 80 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24399 | 5' | -56.9 | NC_005264.1 | + | 69197 | 0.66 | 0.925916 |
Target: 5'- cGACG-AUGUaucGCGCUUgGAUGCGGa -3' miRNA: 3'- -CUGCuUGCAgcuCGCGGAgCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 68163 | 0.72 | 0.636447 |
Target: 5'- -gUGAACGUUGcGGCGCC-CGcCGCGGc -3' miRNA: 3'- cuGCUUGCAGC-UCGCGGaGCuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 67359 | 0.66 | 0.91896 |
Target: 5'- gGGCGGaaaacguagcgcccGCGcUCGcuGCGCCcgcCGGCGCGGu -3' miRNA: 3'- -CUGCU--------------UGC-AGCu-CGCGGa--GCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 67176 | 0.66 | 0.903305 |
Target: 5'- gGugGAugG-CGgccugcAGCGCUaUGACGCGGc -3' miRNA: 3'- -CugCUugCaGC------UCGCGGaGCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 66200 | 0.68 | 0.839961 |
Target: 5'- cGGCGGGCGgu--GCGCCUC--CGCGGc -3' miRNA: 3'- -CUGCUUGCagcuCGCGGAGcuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 61240 | 0.66 | 0.911625 |
Target: 5'- uGGCGAugGcgcgcuccagcucaCGGcGCGCCUCGGCGUa- -3' miRNA: 3'- -CUGCUugCa-------------GCU-CGCGGAGCUGCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 56595 | 0.66 | 0.920599 |
Target: 5'- aGCaGGCG-CGAGCGCCUCGcgacCGCu- -3' miRNA: 3'- cUGcUUGCaGCUCGCGGAGCu---GCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 56314 | 0.66 | 0.920599 |
Target: 5'- cGACGAACcgauaGcCGuuCGCgUCGACGUGGc -3' miRNA: 3'- -CUGCUUG-----CaGCucGCGgAGCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 56232 | 0.74 | 0.509526 |
Target: 5'- uGGCGAGCGUCGcGCGgCUUuugucgagGugGCGGg -3' miRNA: 3'- -CUGCUUGCAGCuCGCgGAG--------CugCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 55156 | 0.66 | 0.903305 |
Target: 5'- uGGCGcAGCGUau-GCgGCCUCugGGCGCGGc -3' miRNA: 3'- -CUGC-UUGCAgcuCG-CGGAG--CUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 54589 | 0.66 | 0.897098 |
Target: 5'- -gUGAGCGUgGucaacGCcgGCCUCGGCGCGu -3' miRNA: 3'- cuGCUUGCAgCu----CG--CGGAGCUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 53556 | 0.71 | 0.666186 |
Target: 5'- uGACGAAaGUCGuugucGCGCagagCGGCGCGGc -3' miRNA: 3'- -CUGCUUgCAGCu----CGCGga--GCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 51095 | 0.68 | 0.818799 |
Target: 5'- cGCGGuCGcCGGugcugcggucugcucGCGCCUCGACGCuGGc -3' miRNA: 3'- cUGCUuGCaGCU---------------CGCGGAGCUGCG-CC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 48389 | 0.66 | 0.915057 |
Target: 5'- aGACugGGGCGUCGGGCggcgGCCagGA-GCGGg -3' miRNA: 3'- -CUG--CUUGCAGCUCG----CGGagCUgCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 46229 | 0.67 | 0.884036 |
Target: 5'- cGACGAACGUguugCGAccggagaagaccGCGCCUgGGgGCGu -3' miRNA: 3'- -CUGCUUGCA----GCU------------CGCGGAgCUgCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 45912 | 0.69 | 0.80695 |
Target: 5'- cGACGGA-GcCGAGCaGCUaguuUCGAUGCGGu -3' miRNA: 3'- -CUGCUUgCaGCUCG-CGG----AGCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 45404 | 0.68 | 0.847786 |
Target: 5'- cGGCGAACGU-GuGCGCCgaCGAUGCc- -3' miRNA: 3'- -CUGCUUGCAgCuCGCGGa-GCUGCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 45130 | 0.71 | 0.685896 |
Target: 5'- cGugGGGCGaaGAaccagacagGCGCCaCGACGCGGa -3' miRNA: 3'- -CugCUUGCagCU---------CGCGGaGCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 44244 | 0.67 | 0.884036 |
Target: 5'- cGGCGAA-GUCGcccaAGUGCUguUCGGCGCGu -3' miRNA: 3'- -CUGCUUgCAGC----UCGCGG--AGCUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 43915 | 0.69 | 0.780601 |
Target: 5'- cGCGGccgucgccucgACGUCGAGgGCCaaGuACGCGGu -3' miRNA: 3'- cUGCU-----------UGCAGCUCgCGGagC-UGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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