miRNA display CGI


Results 81 - 100 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 43560 0.7 0.734292
Target:  5'- -cUGGAUGUCGAGCggcccGCCUCGcUGUGGc -3'
miRNA:   3'- cuGCUUGCAGCUCG-----CGGAGCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 43166 0.69 0.798306
Target:  5'- gGGgGGGCGcgUGAGCcucuaucgcgcuGCCUgCGACGCGGg -3'
miRNA:   3'- -CUgCUUGCa-GCUCG------------CGGA-GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 40185 0.71 0.695692
Target:  5'- cGACGAAUGUCaGcGCGCC-CGcccuCGCGGc -3'
miRNA:   3'- -CUGCUUGCAG-CuCGCGGaGCu---GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 38018 0.67 0.869417
Target:  5'- -uUGAACGccgUGGGCGCCUCGguggugcACGaCGGu -3'
miRNA:   3'- cuGCUUGCa--GCUCGCGGAGC-------UGC-GCC- -5'
24399 5' -56.9 NC_005264.1 + 35963 0.66 0.903305
Target:  5'- cGACGAugG-CGAuuCGCCUggagggGGCGCGGa -3'
miRNA:   3'- -CUGCUugCaGCUc-GCGGAg-----CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 35781 0.75 0.463368
Target:  5'- aGGCGGAgGgcgCGguGGCGCCgUCGugGCGGg -3'
miRNA:   3'- -CUGCUUgCa--GC--UCGCGG-AGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 34781 0.74 0.528529
Target:  5'- aGAUGAGCcgcucaugCGGGCgGCCaUCGACGCGGu -3'
miRNA:   3'- -CUGCUUGca------GCUCG-CGG-AGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 34235 0.73 0.567262
Target:  5'- aGACGGACGgguuUCGuccCGCCUCGugcGCGCGGu -3'
miRNA:   3'- -CUGCUUGC----AGCuc-GCGGAGC---UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 33869 0.74 0.509526
Target:  5'- --aGAACGUgGAGCGUccgCUCGAgGCGGc -3'
miRNA:   3'- cugCUUGCAgCUCGCG---GAGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 33263 0.66 0.903305
Target:  5'- cGGCGAACGcgCGAuccGCGCCccugagggCGGCGCc- -3'
miRNA:   3'- -CUGCUUGCa-GCU---CGCGGa-------GCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 33070 0.71 0.705438
Target:  5'- uGCG-ACGUCGcGGUGCC-CGGgGCGGa -3'
miRNA:   3'- cUGCuUGCAGC-UCGCGGaGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 31401 0.69 0.80695
Target:  5'- --aGcACGUagCGGGcCGCCUCGGgGCGGg -3'
miRNA:   3'- cugCuUGCA--GCUC-GCGGAGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 30374 0.67 0.884036
Target:  5'- cGGCGccgccGCGUC--GCGUCUCGGCgGCGGc -3'
miRNA:   3'- -CUGCu----UGCAGcuCGCGGAGCUG-CGCC- -5'
24399 5' -56.9 NC_005264.1 + 29795 0.67 0.870133
Target:  5'- cACGuagGCGUUGAuaugcuucCGCCUCGGCGCuGGa -3'
miRNA:   3'- cUGCu--UGCAGCUc-------GCGGAGCUGCG-CC- -5'
24399 5' -56.9 NC_005264.1 + 25717 0.69 0.780601
Target:  5'- cGCGGGCGgcagCGGuGCGUaCUCGGuCGCGGa -3'
miRNA:   3'- cUGCUUGCa---GCU-CGCG-GAGCU-GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 25520 0.73 0.586908
Target:  5'- --aGGAUGUCaAGCGCCcauaaggCGGCGCGGa -3'
miRNA:   3'- cugCUUGCAGcUCGCGGa------GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 24490 0.73 0.567262
Target:  5'- uGCGAuagucGCGuUCGGGCGCCUUGuCGCGc -3'
miRNA:   3'- cUGCU-----UGC-AGCUCGCGGAGCuGCGCc -5'
24399 5' -56.9 NC_005264.1 + 22665 0.69 0.762396
Target:  5'- cACGAAgGaCGAGCGUCUCGcCGCu- -3'
miRNA:   3'- cUGCUUgCaGCUCGCGGAGCuGCGcc -5'
24399 5' -56.9 NC_005264.1 + 22137 0.69 0.806092
Target:  5'- aACGAGCG-CGAcgcGCGCCUuagauugCGcCGCGGg -3'
miRNA:   3'- cUGCUUGCaGCU---CGCGGA-------GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 19886 0.66 0.920599
Target:  5'- cGCGGccGCGcuagccauuUCGGGUGCUUUGugGUGGc -3'
miRNA:   3'- cUGCU--UGC---------AGCUCGCGGAGCugCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.