miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 126284 0.7 0.71416
Target:  5'- uGGCGGAgGUCG-GCGCCagGACgaagacgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGCuCGCGGagCUG-------CGCC- -5'
24399 5' -56.9 NC_005264.1 + 137291 0.72 0.636447
Target:  5'- gGACGAGCG-CGAcaaGCGCCUUGucCGCGc -3'
miRNA:   3'- -CUGCUUGCaGCU---CGCGGAGCu-GCGCc -5'
24399 5' -56.9 NC_005264.1 + 16627 0.72 0.646373
Target:  5'- cGGCGAucgacACGUCGAguGCGUCUCuGGUGCGGa -3'
miRNA:   3'- -CUGCU-----UGCAGCU--CGCGGAG-CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 131918 0.71 0.665198
Target:  5'- gGACGGAcCGUCGAGCcgcccgGCCUCgcaguccucccccGACGCGu -3'
miRNA:   3'- -CUGCUU-GCAGCUCG------CGGAG-------------CUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 53556 0.71 0.666186
Target:  5'- uGACGAAaGUCGuugucGCGCagagCGGCGCGGc -3'
miRNA:   3'- -CUGCUUgCAGCu----CGCGga--GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 136356 0.71 0.685896
Target:  5'- uACGGGCGcUGGGCGCUgcCGGCGCGa -3'
miRNA:   3'- cUGCUUGCaGCUCGCGGa-GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 132379 0.71 0.695692
Target:  5'- gGAUGAACGUCGGG-GCCgagcCGGggccCGCGGc -3'
miRNA:   3'- -CUGCUUGCAGCUCgCGGa---GCU----GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 159212 0.71 0.695692
Target:  5'- cGACGAAUGUCaGcGCGCC-CGcccuCGCGGc -3'
miRNA:   3'- -CUGCUUGCAG-CuCGCGGaGCu---GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 33070 0.71 0.705438
Target:  5'- uGCG-ACGUCGcGGUGCC-CGGgGCGGa -3'
miRNA:   3'- cUGCuUGCAGC-UCGCGGaGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 96289 0.72 0.636447
Target:  5'- aGACGcGC-UCGuGCGCCUCGGCGUc- -3'
miRNA:   3'- -CUGCuUGcAGCuCGCGGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 126896 0.73 0.577067
Target:  5'- gGGCG-GCGUCG-GCGCCccaGAUGCGGc -3'
miRNA:   3'- -CUGCuUGCAGCuCGCGGag-CUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 34235 0.73 0.567262
Target:  5'- aGACGGACGgguuUCGuccCGCCUCGugcGCGCGGu -3'
miRNA:   3'- -CUGCUUGC----AGCuc-GCGGAGC---UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 86974 0.77 0.365623
Target:  5'- gGACGAGacccuguuucuggaGUCGcAGCGCCUCGugGCGc -3'
miRNA:   3'- -CUGCUUg-------------CAGC-UCGCGGAGCugCGCc -5'
24399 5' -56.9 NC_005264.1 + 71875 0.76 0.428071
Target:  5'- cGACGGcACG-CGGGCGCC-CGACGCa- -3'
miRNA:   3'- -CUGCU-UGCaGCUCGCGGaGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 154807 0.75 0.463368
Target:  5'- aGGCGGAgGgcgCGguGGCGCCgUCGugGCGGg -3'
miRNA:   3'- -CUGCUUgCa--GC--UCGCGG-AGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 33869 0.74 0.509526
Target:  5'- --aGAACGUgGAGCGUccgCUCGAgGCGGc -3'
miRNA:   3'- cugCUUGCAgCUCGCG---GAGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 56232 0.74 0.509526
Target:  5'- uGGCGAGCGUCGcGCGgCUUuugucgagGugGCGGg -3'
miRNA:   3'- -CUGCUUGCAGCuCGCgGAG--------CugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 127382 0.74 0.518993
Target:  5'- gGGCGAcCGUCGcugaugcuuaccGGCGCCg-GACGCGGc -3'
miRNA:   3'- -CUGCUuGCAGC------------UCGCGGagCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 34781 0.74 0.528529
Target:  5'- aGAUGAGCcgcucaugCGGGCgGCCaUCGACGCGGu -3'
miRNA:   3'- -CUGCUUGca------GCUCG-CGG-AGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 24490 0.73 0.567262
Target:  5'- uGCGAuagucGCGuUCGGGCGCCUUGuCGCGc -3'
miRNA:   3'- cUGCU-----UGC-AGCUCGCGGAGCuGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.