miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 56232 0.74 0.509526
Target:  5'- uGGCGAGCGUCGcGCGgCUUuugucgagGugGCGGg -3'
miRNA:   3'- -CUGCUUGCAGCuCGCgGAG--------CugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 33869 0.74 0.509526
Target:  5'- --aGAACGUgGAGCGUccgCUCGAgGCGGc -3'
miRNA:   3'- cugCUUGCAgCUCGCG---GAGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 154807 0.75 0.463368
Target:  5'- aGGCGGAgGgcgCGguGGCGCCgUCGugGCGGg -3'
miRNA:   3'- -CUGCUUgCa--GC--UCGCGG-AGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 71875 0.76 0.428071
Target:  5'- cGACGGcACG-CGGGCGCC-CGACGCa- -3'
miRNA:   3'- -CUGCU-UGCaGCUCGCGGaGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 86974 0.77 0.365623
Target:  5'- gGACGAGacccuguuucuggaGUCGcAGCGCCUCGugGCGc -3'
miRNA:   3'- -CUGCUUg-------------CAGC-UCGCGGAGCugCGCc -5'
24399 5' -56.9 NC_005264.1 + 131918 0.71 0.665198
Target:  5'- gGACGGAcCGUCGAGCcgcccgGCCUCgcaguccucccccGACGCGu -3'
miRNA:   3'- -CUGCUU-GCAGCUCG------CGGAG-------------CUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 53556 0.71 0.666186
Target:  5'- uGACGAAaGUCGuugucGCGCagagCGGCGCGGc -3'
miRNA:   3'- -CUGCUUgCAGCu----CGCGga--GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 162193 0.69 0.798306
Target:  5'- gGGgGGGCGcgUGAGCcucuaucgcgcuGCCUgCGACGCGGg -3'
miRNA:   3'- -CUgCUUGCa-GCUCG------------CGGA-GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 132299 0.69 0.78952
Target:  5'- cGACGAGgGUUc-GCGCCagCGAgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGcuCGCGGa-GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 25717 0.69 0.780601
Target:  5'- cGCGGGCGgcagCGGuGCGUaCUCGGuCGCGGa -3'
miRNA:   3'- cUGCUUGCa---GCU-CGCG-GAGCU-GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 114293 0.69 0.762396
Target:  5'- cGACGAaggcgACGg-GGGCGCgCgggaCGACGCGGa -3'
miRNA:   3'- -CUGCU-----UGCagCUCGCG-Ga---GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 22665 0.69 0.762396
Target:  5'- cACGAAgGaCGAGCGUCUCGcCGCu- -3'
miRNA:   3'- cUGCUUgCaGCUCGCGGAGCuGCGcc -5'
24399 5' -56.9 NC_005264.1 + 105582 0.7 0.753125
Target:  5'- cGCGGGCuagggcUCGAGCGCCUCaaGACcGUGGu -3'
miRNA:   3'- cUGCUUGc-----AGCUCGCGGAG--CUG-CGCC- -5'
24399 5' -56.9 NC_005264.1 + 162587 0.7 0.734292
Target:  5'- -cUGGAUGUCGAGCggcccGCCUCGcUGUGGc -3'
miRNA:   3'- cuGCUUGCAGCUCG-----CGGAGCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 128714 0.7 0.715126
Target:  5'- aGGCGGGC-UC--GCGCCUCGACGCu- -3'
miRNA:   3'- -CUGCUUGcAGcuCGCGGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 126284 0.7 0.71416
Target:  5'- uGGCGGAgGUCG-GCGCCagGACgaagacgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGCuCGCGGagCUG-------CGCC- -5'
24399 5' -56.9 NC_005264.1 + 33070 0.71 0.705438
Target:  5'- uGCG-ACGUCGcGGUGCC-CGGgGCGGa -3'
miRNA:   3'- cUGCuUGCAGC-UCGCGGaGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 159212 0.71 0.695692
Target:  5'- cGACGAAUGUCaGcGCGCC-CGcccuCGCGGc -3'
miRNA:   3'- -CUGCUUGCAG-CuCGCGGaGCu---GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 132379 0.71 0.695692
Target:  5'- gGAUGAACGUCGGG-GCCgagcCGGggccCGCGGc -3'
miRNA:   3'- -CUGCUUGCAGCUCgCGGa---GCU----GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 136356 0.71 0.685896
Target:  5'- uACGGGCGcUGGGCGCUgcCGGCGCGa -3'
miRNA:   3'- cUGCUUGCaGCUCGCGGa-GCUGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.