Results 61 - 80 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24399 | 5' | -56.9 | NC_005264.1 | + | 159212 | 0.71 | 0.695692 |
Target: 5'- cGACGAAUGUCaGcGCGCC-CGcccuCGCGGc -3' miRNA: 3'- -CUGCUUGCAG-CuCGCGGaGCu---GCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 33070 | 0.71 | 0.705438 |
Target: 5'- uGCG-ACGUCGcGGUGCC-CGGgGCGGa -3' miRNA: 3'- cUGCuUGCAGC-UCGCGGaGCUgCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 126284 | 0.7 | 0.71416 |
Target: 5'- uGGCGGAgGUCG-GCGCCagGACgaagacgGCGGg -3' miRNA: 3'- -CUGCUUgCAGCuCGCGGagCUG-------CGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 128714 | 0.7 | 0.715126 |
Target: 5'- aGGCGGGC-UC--GCGCCUCGACGCu- -3' miRNA: 3'- -CUGCUUGcAGcuCGCGGAGCUGCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 162587 | 0.7 | 0.734292 |
Target: 5'- -cUGGAUGUCGAGCggcccGCCUCGcUGUGGc -3' miRNA: 3'- cuGCUUGCAGCUCG-----CGGAGCuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 6439 | 0.67 | 0.890019 |
Target: 5'- cGGCG-GCGUCGcuGGCGgagaacuCCUCGgcgGCGCGGc -3' miRNA: 3'- -CUGCuUGCAGC--UCGC-------GGAGC---UGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 46229 | 0.67 | 0.884036 |
Target: 5'- cGACGAACGUguugCGAccggagaagaccGCGCCUgGGgGCGu -3' miRNA: 3'- -CUGCUUGCA----GCU------------CGCGGAgCUgCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 44244 | 0.67 | 0.884036 |
Target: 5'- cGGCGAA-GUCGcccaAGUGCUguUCGGCGCGu -3' miRNA: 3'- -CUGCUUgCAGC----UCGCGG--AGCUGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 30374 | 0.67 | 0.884036 |
Target: 5'- cGGCGccgccGCGUC--GCGUCUCGGCgGCGGc -3' miRNA: 3'- -CUGCu----UGCAGcuCGCGGAGCUG-CGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 103691 | 0.67 | 0.877187 |
Target: 5'- gGGCGAGggggaaGUUGAGgGCCaguggagcggCGGCGCGGc -3' miRNA: 3'- -CUGCUUg-----CAGCUCgCGGa---------GCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 100837 | 0.67 | 0.877187 |
Target: 5'- gGACG-ACGgCGAGUucucCCUCGACGCa- -3' miRNA: 3'- -CUGCuUGCaGCUCGc---GGAGCUGCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 120400 | 0.67 | 0.890674 |
Target: 5'- -uCGAGCG-CGAGUGCCgcagCGccgaACGCGa -3' miRNA: 3'- cuGCUUGCaGCUCGCGGa---GC----UGCGCc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 7059 | 0.66 | 0.903305 |
Target: 5'- cGGCGAcgGCGcCGgccGGCGCCgucgCGcUGCGGg -3' miRNA: 3'- -CUGCU--UGCaGC---UCGCGGa---GCuGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 33263 | 0.66 | 0.903305 |
Target: 5'- cGGCGAACGcgCGAuccGCGCCccugagggCGGCGCc- -3' miRNA: 3'- -CUGCUUGCa-GCU---CGCGGa-------GCUGCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 10394 | 0.66 | 0.914491 |
Target: 5'- cGACGGGgagggauCGUCGAGCGggaUCGugGCa- -3' miRNA: 3'- -CUGCUU-------GCAGCUCGCgg-AGCugCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 48389 | 0.66 | 0.915057 |
Target: 5'- aGACugGGGCGUCGGGCggcgGCCagGA-GCGGg -3' miRNA: 3'- -CUG--CUUGCAGCUCG----CGGagCUgCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 56595 | 0.66 | 0.920599 |
Target: 5'- aGCaGGCG-CGAGCGCCUCGcgacCGCu- -3' miRNA: 3'- cUGcUUGCaGCUCGCGGAGCu---GCGcc -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 56314 | 0.66 | 0.920599 |
Target: 5'- cGACGAACcgauaGcCGuuCGCgUCGACGUGGc -3' miRNA: 3'- -CUGCUUG-----CaGCucGCGgAGCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 146833 | 0.66 | 0.920599 |
Target: 5'- cGGCGGuCGUCGccUGCCaUGAUGCGGc -3' miRNA: 3'- -CUGCUuGCAGCucGCGGaGCUGCGCC- -5' |
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24399 | 5' | -56.9 | NC_005264.1 | + | 114457 | 1.1 | 0.003048 |
Target: 5'- cGACGAACGUCGAGCGCCUCGACGCGGc -3' miRNA: 3'- -CUGCUUGCAGCUCGCGGAGCUGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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