miRNA display CGI


Results 101 - 117 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 56595 0.66 0.920599
Target:  5'- aGCaGGCG-CGAGCGCCUCGcgacCGCu- -3'
miRNA:   3'- cUGcUUGCaGCUCGCGGAGCu---GCGcc -5'
24399 5' -56.9 NC_005264.1 + 56314 0.66 0.920599
Target:  5'- cGACGAACcgauaGcCGuuCGCgUCGACGUGGc -3'
miRNA:   3'- -CUGCUUG-----CaGCucGCGgAGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 146833 0.66 0.920599
Target:  5'- cGGCGGuCGUCGccUGCCaUGAUGCGGc -3'
miRNA:   3'- -CUGCUuGCAGCucGCGGaGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 30374 0.67 0.884036
Target:  5'- cGGCGccgccGCGUC--GCGUCUCGGCgGCGGc -3'
miRNA:   3'- -CUGCu----UGCAGcuCGCGGAGCUG-CGCC- -5'
24399 5' -56.9 NC_005264.1 + 103691 0.67 0.877187
Target:  5'- gGGCGAGggggaaGUUGAGgGCCaguggagcggCGGCGCGGc -3'
miRNA:   3'- -CUGCUUg-----CAGCUCgCGGa---------GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 45912 0.69 0.80695
Target:  5'- cGACGGA-GcCGAGCaGCUaguuUCGAUGCGGu -3'
miRNA:   3'- -CUGCUUgCaGCUCG-CGG----AGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 112242 0.69 0.80695
Target:  5'- cGCGAACGUCcAGCGCCgggcugcucagCGcCGCGu -3'
miRNA:   3'- cUGCUUGCAGcUCGCGGa----------GCuGCGCc -5'
24399 5' -56.9 NC_005264.1 + 107032 0.68 0.839961
Target:  5'- cGGCuGAAUGUUGAGuUGCuCUCGuagcCGCGGa -3'
miRNA:   3'- -CUG-CUUGCAGCUC-GCG-GAGCu---GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 151863 0.68 0.847786
Target:  5'- cGGCGAcACGUgGGGgGCgUCuuCGCGGg -3'
miRNA:   3'- -CUGCU-UGCAgCUCgCGgAGcuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 95477 0.68 0.850865
Target:  5'- aGCGAGCG-CGGGCGCUaCGuuuuccgcccucuuCGCGGc -3'
miRNA:   3'- cUGCUUGCaGCUCGCGGaGCu-------------GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 3668 0.68 0.855427
Target:  5'- cGACGAugGgCGGcCGUCUCGGCgGCGa -3'
miRNA:   3'- -CUGCUugCaGCUcGCGGAGCUG-CGCc -5'
24399 5' -56.9 NC_005264.1 + 141461 0.67 0.862878
Target:  5'- aGGCGAGCGgCGGG-GCCUcuuuccaccggcCGAgGCGGc -3'
miRNA:   3'- -CUGCUUGCaGCUCgCGGA------------GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 38018 0.67 0.869417
Target:  5'- -uUGAACGccgUGGGCGCCUCGguggugcACGaCGGu -3'
miRNA:   3'- cuGCUUGCa--GCUCGCGGAGC-------UGC-GCC- -5'
24399 5' -56.9 NC_005264.1 + 29795 0.67 0.870133
Target:  5'- cACGuagGCGUUGAuaugcuucCGCCUCGGCGCuGGa -3'
miRNA:   3'- cUGCu--UGCAGCUc-------GCGGAGCUGCG-CC- -5'
24399 5' -56.9 NC_005264.1 + 110870 0.67 0.870133
Target:  5'- aGAuCGAGCGUgaGcGCGCCgacaCGACGCGu -3'
miRNA:   3'- -CU-GCUUGCAg-CuCGCGGa---GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 100837 0.67 0.877187
Target:  5'- gGACG-ACGgCGAGUucucCCUCGACGCa- -3'
miRNA:   3'- -CUGCuUGCaGCUCGc---GGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 99971 0.66 0.925916
Target:  5'- aGACGAG-GcCaAGCGCCUCGugGaCGa -3'
miRNA:   3'- -CUGCUUgCaGcUCGCGGAGCugC-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.