miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 99971 0.66 0.925916
Target:  5'- aGACGAG-GcCaAGCGCCUCGugGaCGa -3'
miRNA:   3'- -CUGCUUgCaGcUCGCGGAGCugC-GCc -5'
24399 5' -56.9 NC_005264.1 + 38018 0.67 0.869417
Target:  5'- -uUGAACGccgUGGGCGCCUCGguggugcACGaCGGu -3'
miRNA:   3'- cuGCUUGCa--GCUCGCGGAGC-------UGC-GCC- -5'
24399 5' -56.9 NC_005264.1 + 3668 0.68 0.855427
Target:  5'- cGACGAugGgCGGcCGUCUCGGCgGCGa -3'
miRNA:   3'- -CUGCUugCaGCUcGCGGAGCUG-CGCc -5'
24399 5' -56.9 NC_005264.1 + 114457 1.1 0.003048
Target:  5'- cGACGAACGUCGAGCGCCUCGACGCGGc -3'
miRNA:   3'- -CUGCUUGCAGCUCGCGGAGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 48389 0.66 0.915057
Target:  5'- aGACugGGGCGUCGGGCggcgGCCagGA-GCGGg -3'
miRNA:   3'- -CUG--CUUGCAGCUCG----CGGagCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 10394 0.66 0.914491
Target:  5'- cGACGGGgagggauCGUCGAGCGggaUCGugGCa- -3'
miRNA:   3'- -CUGCUU-------GCAGCUCGCgg-AGCugCGcc -5'
24399 5' -56.9 NC_005264.1 + 7059 0.66 0.903305
Target:  5'- cGGCGAcgGCGcCGgccGGCGCCgucgCGcUGCGGg -3'
miRNA:   3'- -CUGCU--UGCaGC---UCGCGGa---GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 120400 0.67 0.890674
Target:  5'- -uCGAGCG-CGAGUGCCgcagCGccgaACGCGa -3'
miRNA:   3'- cuGCUUGCaGCUCGCGGa---GC----UGCGCc -5'
24399 5' -56.9 NC_005264.1 + 44244 0.67 0.884036
Target:  5'- cGGCGAA-GUCGcccaAGUGCUguUCGGCGCGu -3'
miRNA:   3'- -CUGCUUgCAGC----UCGCGG--AGCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 29795 0.67 0.870133
Target:  5'- cACGuagGCGUUGAuaugcuucCGCCUCGGCGCuGGa -3'
miRNA:   3'- cUGCu--UGCAGCUc-------GCGGAGCUGCG-CC- -5'
24399 5' -56.9 NC_005264.1 + 103691 0.67 0.877187
Target:  5'- gGGCGAGggggaaGUUGAGgGCCaguggagcggCGGCGCGGc -3'
miRNA:   3'- -CUGCUUg-----CAGCUCgCGGa---------GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 46229 0.67 0.884036
Target:  5'- cGACGAACGUguugCGAccggagaagaccGCGCCUgGGgGCGu -3'
miRNA:   3'- -CUGCUUGCA----GCU------------CGCGGAgCUgCGCc -5'
24399 5' -56.9 NC_005264.1 + 146833 0.66 0.920599
Target:  5'- cGGCGGuCGUCGccUGCCaUGAUGCGGc -3'
miRNA:   3'- -CUGCUuGCAGCucGCGGaGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 100837 0.67 0.877187
Target:  5'- gGACG-ACGgCGAGUucucCCUCGACGCa- -3'
miRNA:   3'- -CUGCuUGCaGCUCGc---GGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 56314 0.66 0.920599
Target:  5'- cGACGAACcgauaGcCGuuCGCgUCGACGUGGc -3'
miRNA:   3'- -CUGCUUG-----CaGCucGCGgAGCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 6439 0.67 0.890019
Target:  5'- cGGCG-GCGUCGcuGGCGgagaacuCCUCGgcgGCGCGGc -3'
miRNA:   3'- -CUGCuUGCAGC--UCGC-------GGAGC---UGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 110870 0.67 0.870133
Target:  5'- aGAuCGAGCGUgaGcGCGCCgacaCGACGCGu -3'
miRNA:   3'- -CU-GCUUGCAg-CuCGCGGa---GCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 141461 0.67 0.862878
Target:  5'- aGGCGAGCGgCGGG-GCCUcuuuccaccggcCGAgGCGGc -3'
miRNA:   3'- -CUGCUUGCaGCUCgCGGA------------GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 56595 0.66 0.920599
Target:  5'- aGCaGGCG-CGAGCGCCUCGcgacCGCu- -3'
miRNA:   3'- cUGcUUGCaGCUCGCGGAGCu---GCGcc -5'
24399 5' -56.9 NC_005264.1 + 33263 0.66 0.903305
Target:  5'- cGGCGAACGcgCGAuccGCGCCccugagggCGGCGCc- -3'
miRNA:   3'- -CUGCUUGCa-GCU---CGCGGa-------GCUGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.