miRNA display CGI


Results 41 - 60 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24399 5' -56.9 NC_005264.1 + 99971 0.66 0.925916
Target:  5'- aGACGAG-GcCaAGCGCCUCGugGaCGa -3'
miRNA:   3'- -CUGCUUgCaGcUCGCGGAGCugC-GCc -5'
24399 5' -56.9 NC_005264.1 + 35781 0.75 0.463368
Target:  5'- aGGCGGAgGgcgCGguGGCGCCgUCGugGCGGg -3'
miRNA:   3'- -CUGCUUgCa--GC--UCGCGG-AGCugCGCC- -5'
24399 5' -56.9 NC_005264.1 + 13272 0.69 0.78952
Target:  5'- cGACGAGgGUUc-GCGCCagCGAgGCGGg -3'
miRNA:   3'- -CUGCUUgCAGcuCGCGGa-GCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 152670 0.71 0.695692
Target:  5'- cGACGAcaagauacuCGcCGAG-GCCUgGACGCGGu -3'
miRNA:   3'- -CUGCUu--------GCaGCUCgCGGAgCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 9687 0.7 0.715126
Target:  5'- aGGCGGGC-UC--GCGCCUCGACGCu- -3'
miRNA:   3'- -CUGCUUGcAGcuCGCGGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 31401 0.69 0.80695
Target:  5'- --aGcACGUagCGGGcCGCCUCGGgGCGGg -3'
miRNA:   3'- cugCuUGCA--GCUC-GCGGAGCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 107032 0.68 0.839961
Target:  5'- cGGCuGAAUGUUGAGuUGCuCUCGuagcCGCGGa -3'
miRNA:   3'- -CUG-CUUGCAGCUC-GCG-GAGCu---GCGCC- -5'
24399 5' -56.9 NC_005264.1 + 3668 0.68 0.855427
Target:  5'- cGACGAugGgCGGcCGUCUCGGCgGCGa -3'
miRNA:   3'- -CUGCUugCaGCUcGCGGAGCUG-CGCc -5'
24399 5' -56.9 NC_005264.1 + 100837 0.67 0.877187
Target:  5'- gGACG-ACGgCGAGUucucCCUCGACGCa- -3'
miRNA:   3'- -CUGCuUGCaGCUCGc---GGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 44244 0.67 0.884036
Target:  5'- cGGCGAA-GUCGcccaAGUGCUguUCGGCGCGu -3'
miRNA:   3'- -CUGCUUgCAGC----UCGCGG--AGCUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 7059 0.66 0.903305
Target:  5'- cGGCGAcgGCGcCGgccGGCGCCgucgCGcUGCGGg -3'
miRNA:   3'- -CUGCU--UGCaGC---UCGCGGa---GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 48389 0.66 0.915057
Target:  5'- aGACugGGGCGUCGGGCggcgGCCagGA-GCGGg -3'
miRNA:   3'- -CUG--CUUGCAGCUCG----CGGagCUgCGCC- -5'
24399 5' -56.9 NC_005264.1 + 67359 0.66 0.91896
Target:  5'- gGGCGGaaaacguagcgcccGCGcUCGcuGCGCCcgcCGGCGCGGu -3'
miRNA:   3'- -CUGCU--------------UGC-AGCu-CGCGGa--GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 129421 0.66 0.914491
Target:  5'- cGACGGGgagggauCGUCGAGCGggaUCGugGCa- -3'
miRNA:   3'- -CUGCUU-------GCAGCUCGCgg-AGCugCGcc -5'
24399 5' -56.9 NC_005264.1 + 61240 0.66 0.911625
Target:  5'- uGGCGAugGcgcgcuccagcucaCGGcGCGCCUCGGCGUa- -3'
miRNA:   3'- -CUGCUugCa-------------GCU-CGCGGAGCUGCGcc -5'
24399 5' -56.9 NC_005264.1 + 13965 0.66 0.909292
Target:  5'- cGACGAGgaGaCGAGCGa---GACGCGGg -3'
miRNA:   3'- -CUGCUUg-CaGCUCGCggagCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 162193 0.69 0.798306
Target:  5'- gGGgGGGCGcgUGAGCcucuaucgcgcuGCCUgCGACGCGGg -3'
miRNA:   3'- -CUgCUUGCa-GCUCG------------CGGA-GCUGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 22137 0.69 0.806092
Target:  5'- aACGAGCG-CGAcgcGCGCCUuagauugCGcCGCGGg -3'
miRNA:   3'- cUGCUUGCaGCU---CGCGGA-------GCuGCGCC- -5'
24399 5' -56.9 NC_005264.1 + 131918 0.71 0.665198
Target:  5'- gGACGGAcCGUCGAGCcgcccgGCCUCgcaguccucccccGACGCGu -3'
miRNA:   3'- -CUGCUU-GCAGCUCG------CGGAG-------------CUGCGCc -5'
24399 5' -56.9 NC_005264.1 + 131409 0.69 0.806092
Target:  5'- gGGCGGuccCGUCGAGCuauaagaucucccGCCcCGAgGCGGc -3'
miRNA:   3'- -CUGCUu--GCAGCUCG-------------CGGaGCUgCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.