miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
244 3' -57.8 AC_000008.1 + 8478 0.66 0.476747
Target:  5'- --gCGGCGUCGauGGCuuGCAagaGGCCg -3'
miRNA:   3'- gaaGCCGUAGCgcCCGcgCGUa--CUGG- -5'
244 3' -57.8 AC_000008.1 + 16485 0.66 0.476747
Target:  5'- --gCGGgGg-GCGGGUGCGCAcgGGCa -3'
miRNA:   3'- gaaGCCgUagCGCCCGCGCGUa-CUGg -5'
244 3' -57.8 AC_000008.1 + 11368 0.66 0.452499
Target:  5'- --gCGGgAUCGaaaguuccacgcaGGGCGCgagcugcgGCAUGGCCu -3'
miRNA:   3'- gaaGCCgUAGCg------------CCCGCG--------CGUACUGG- -5'
244 3' -57.8 AC_000008.1 + 11538 0.67 0.427007
Target:  5'- -gUCGGCGgccgccaCGUGuGcGCGCGCggGACUa -3'
miRNA:   3'- gaAGCCGUa------GCGC-C-CGCGCGuaCUGG- -5'
244 3' -57.8 AC_000008.1 + 16125 0.67 0.417432
Target:  5'- --gUGGCggCGUGGGCGUGUAguUGcgcGCCu -3'
miRNA:   3'- gaaGCCGuaGCGCCCGCGCGU--AC---UGG- -5'
244 3' -57.8 AC_000008.1 + 27948 0.67 0.41175
Target:  5'- --cCGGaGUCGCGGGCaaagcacuuguggcgGCGaCAgugGACCa -3'
miRNA:   3'- gaaGCCgUAGCGCCCG---------------CGC-GUa--CUGG- -5'
244 3' -57.8 AC_000008.1 + 5475 0.67 0.407989
Target:  5'- --gCGGCGUgGCccuuGGCGCGCAgcuuGCCc -3'
miRNA:   3'- gaaGCCGUAgCGc---CCGCGCGUac--UGG- -5'
244 3' -57.8 AC_000008.1 + 18858 0.67 0.389509
Target:  5'- -cUUGGaaa-GCGGGCGCGCGgcGGCUc -3'
miRNA:   3'- gaAGCCguagCGCCCGCGCGUa-CUGG- -5'
244 3' -57.8 AC_000008.1 + 17145 0.67 0.380477
Target:  5'- --gUGGCGcCGggacUGGGCGUGCA-GACCg -3'
miRNA:   3'- gaaGCCGUaGC----GCCCGCGCGUaCUGG- -5'
244 3' -57.8 AC_000008.1 + 12327 0.68 0.337461
Target:  5'- --cCGGCggUGCGGGCgGCGC-UGcagaGCCa -3'
miRNA:   3'- gaaGCCGuaGCGCCCG-CGCGuAC----UGG- -5'
244 3' -57.8 AC_000008.1 + 12615 0.69 0.290662
Target:  5'- --cCGGCcUCGuCGGGC-CGgAUGGCCc -3'
miRNA:   3'- gaaGCCGuAGC-GCCCGcGCgUACUGG- -5'
244 3' -57.8 AC_000008.1 + 9505 0.7 0.283375
Target:  5'- --aCGGCGcggccguucUCGCGGGgGCGCAguuggaaGACg -3'
miRNA:   3'- gaaGCCGU---------AGCGCCCgCGCGUa------CUGg -5'
244 3' -57.8 AC_000008.1 + 27342 0.71 0.224211
Target:  5'- aUUCGGUuUCgGUGGGCGCGgAuuccguUGACCc -3'
miRNA:   3'- gAAGCCGuAG-CGCCCGCGCgU------ACUGG- -5'
244 3' -57.8 AC_000008.1 + 8523 0.71 0.212577
Target:  5'- --aCGGUAcCGCGcGGCGgGCGgugGGCCg -3'
miRNA:   3'- gaaGCCGUaGCGC-CCGCgCGUa--CUGG- -5'
244 3' -57.8 AC_000008.1 + 6296 0.74 0.144922
Target:  5'- gUUUGGUuuuuGUCGCGaucGGCGCGCuccuUGGCCg -3'
miRNA:   3'- gAAGCCG----UAGCGC---CCGCGCGu---ACUGG- -5'
244 3' -57.8 AC_000008.1 + 9022 1.12 0.000197
Target:  5'- cCUUCGGCAUCGCGGGCGCGCAUGACCa -3'
miRNA:   3'- -GAAGCCGUAGCGCCCGCGCGUACUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.