miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 3' -57.2 NC_005264.1 + 107873 0.66 0.877596
Target:  5'- uGCCGGAAGGUcgUGCauuGCcauuaGCGUGUUCa -3'
miRNA:   3'- -CGGUCUUCCG--ACGc--CGca---UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 145981 0.66 0.870377
Target:  5'- cGCCGacaaggucaacGAGGGCcucuaCGGCGUGCGcguuauggGCUCg -3'
miRNA:   3'- -CGGU-----------CUUCCGac---GCCGCAUGCa-------CGAG- -5'
24400 3' -57.2 NC_005264.1 + 123630 0.66 0.870377
Target:  5'- cGCCAGcgccGCgGCGGCGUaggcGCGUuCUCg -3'
miRNA:   3'- -CGGUCuuc-CGaCGCCGCA----UGCAcGAG- -5'
24400 3' -57.2 NC_005264.1 + 119488 0.66 0.870377
Target:  5'- uGCUuguGGAuguGGCUGCGcaggGCGUGCUCc -3'
miRNA:   3'- -CGG---UCUu--CCGACGCcgcaUGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 4603 0.66 0.870377
Target:  5'- cGCCAGcgccGCgGCGGCGUaggcGCGUuCUCg -3'
miRNA:   3'- -CGGUCuuc-CGaCGCCGCA----UGCAcGAG- -5'
24400 3' -57.2 NC_005264.1 + 62671 0.66 0.869643
Target:  5'- cGCCaAGAucGCUuCGGCGUcagcgcgaagaacGCGUGCUa -3'
miRNA:   3'- -CGG-UCUucCGAcGCCGCA-------------UGCACGAg -5'
24400 3' -57.2 NC_005264.1 + 129540 0.66 0.862946
Target:  5'- uGCgGGcguGGGCUuaGGCGUcgccGCGUGgUCg -3'
miRNA:   3'- -CGgUCu--UCCGAcgCCGCA----UGCACgAG- -5'
24400 3' -57.2 NC_005264.1 + 106071 0.66 0.862946
Target:  5'- uGCCGG--GGUuuccuUGCuuGGCGUGCGUGC-Ca -3'
miRNA:   3'- -CGGUCuuCCG-----ACG--CCGCAUGCACGaG- -5'
24400 3' -57.2 NC_005264.1 + 117839 0.66 0.862946
Target:  5'- --gGGGAGGC-GCGGCGga-GUGCg- -3'
miRNA:   3'- cggUCUUCCGaCGCCGCaugCACGag -5'
24400 3' -57.2 NC_005264.1 + 134964 0.66 0.85531
Target:  5'- gGCCAGAcacgacaaaaAGGCgGCGGCGcaUugG-GCg- -3'
miRNA:   3'- -CGGUCU----------UCCGaCGCCGC--AugCaCGag -5'
24400 3' -57.2 NC_005264.1 + 34325 0.66 0.847474
Target:  5'- cGCCuucGAGGCgGCGGUG-AUGUGCc- -3'
miRNA:   3'- -CGGuc-UUCCGaCGCCGCaUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 29894 0.66 0.847474
Target:  5'- uGCCGcGAAGGCgUGCGGCGcUACcccgucgGCg- -3'
miRNA:   3'- -CGGU-CUUCCG-ACGCCGC-AUGca-----CGag -5'
24400 3' -57.2 NC_005264.1 + 91016 0.66 0.847474
Target:  5'- -aCGGAGGacccauGCUGCcGCGUAUGUGCg- -3'
miRNA:   3'- cgGUCUUC------CGACGcCGCAUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 17683 0.66 0.839445
Target:  5'- gGCgCAGccGAGGCcGCGGCGgcuCGUGUc- -3'
miRNA:   3'- -CG-GUC--UUCCGaCGCCGCau-GCACGag -5'
24400 3' -57.2 NC_005264.1 + 17361 0.66 0.839445
Target:  5'- cGgCAGcuGGCgGCGGCGcggucugugUACGUGCg- -3'
miRNA:   3'- -CgGUCuuCCGaCGCCGC---------AUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 21355 0.66 0.839445
Target:  5'- gGCCGGAugAGGCUGUaGC---CGUGUUCa -3'
miRNA:   3'- -CGGUCU--UCCGACGcCGcauGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 95753 0.66 0.839445
Target:  5'- gGCCAuGggGGaucuguacGCGGCGUGCGaguaCUCg -3'
miRNA:   3'- -CGGU-CuuCCga------CGCCGCAUGCac--GAG- -5'
24400 3' -57.2 NC_005264.1 + 151301 0.67 0.83123
Target:  5'- cCCGGggGGCa---GCGUACGUGUUa -3'
miRNA:   3'- cGGUCuuCCGacgcCGCAUGCACGAg -5'
24400 3' -57.2 NC_005264.1 + 136229 0.67 0.822835
Target:  5'- aCgGGAGGGCcgagGUGGCG-ACGgacacgGCUCa -3'
miRNA:   3'- cGgUCUUCCGa---CGCCGCaUGCa-----CGAG- -5'
24400 3' -57.2 NC_005264.1 + 139416 0.67 0.814269
Target:  5'- uCgAGAcGGGCaccGCuGGCGUacGCGUGCUCg -3'
miRNA:   3'- cGgUCU-UCCGa--CG-CCGCA--UGCACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.