miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 3' -57.2 NC_005264.1 + 112992 1.12 0.001338
Target:  5'- cGCCAGAAGGCUGCGGCGUACGUGCUCg -3'
miRNA:   3'- -CGGUCUUCCGACGCCGCAUGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 41732 0.89 0.051652
Target:  5'- cGCCAGgcGGCaGCGGCGUAUGUGCUg -3'
miRNA:   3'- -CGGUCuuCCGaCGCCGCAUGCACGAg -5'
24400 3' -57.2 NC_005264.1 + 56897 0.75 0.358392
Target:  5'- aCCGGGaacuGGGCgagcauuaugggGCGGCGUACGUGCg- -3'
miRNA:   3'- cGGUCU----UCCGa-----------CGCCGCAUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 80456 0.75 0.392528
Target:  5'- -gCAGAAGGCagcgGUGGUGUGCGaagUGCUCc -3'
miRNA:   3'- cgGUCUUCCGa---CGCCGCAUGC---ACGAG- -5'
24400 3' -57.2 NC_005264.1 + 138397 0.72 0.529885
Target:  5'- aGCCAGucgcuauGGGCcauaGCGGCGagaACGUGCUUu -3'
miRNA:   3'- -CGGUCu------UCCGa---CGCCGCa--UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 97515 0.72 0.549641
Target:  5'- uGCCAGGAgcugccgcGGCUGUGGCGUggcaGCGgGCa- -3'
miRNA:   3'- -CGGUCUU--------CCGACGCCGCA----UGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 125849 0.72 0.549641
Target:  5'- gGCCAGcAGGGCUGCugagucugaaaGGCGggUugGUGCa- -3'
miRNA:   3'- -CGGUC-UUCCGACG-----------CCGC--AugCACGag -5'
24400 3' -57.2 NC_005264.1 + 66480 0.72 0.558607
Target:  5'- gGCCAGAcucaaugcuuggcGGGCUgcGCGGCGcgcucgACGaGCUCg -3'
miRNA:   3'- -CGGUCU-------------UCCGA--CGCCGCa-----UGCaCGAG- -5'
24400 3' -57.2 NC_005264.1 + 131596 0.71 0.56962
Target:  5'- gGUguGGAGGgaGCGGCGcGCGUGggCg -3'
miRNA:   3'- -CGguCUUCCgaCGCCGCaUGCACgaG- -5'
24400 3' -57.2 NC_005264.1 + 129035 0.7 0.620211
Target:  5'- uGCCGGcgagccGGUccaaaGCGGCGUGCGcgGCUCg -3'
miRNA:   3'- -CGGUCuu----CCGa----CGCCGCAUGCa-CGAG- -5'
24400 3' -57.2 NC_005264.1 + 97586 0.7 0.654793
Target:  5'- aGCUAGAAccguaccgcuuccucGGCcGCGGCGgcUACG-GCUCa -3'
miRNA:   3'- -CGGUCUU---------------CCGaCGCCGC--AUGCaCGAG- -5'
24400 3' -57.2 NC_005264.1 + 5261 0.7 0.660883
Target:  5'- cGCCGGGAGGCgagucGCGGCcggACG-GCg- -3'
miRNA:   3'- -CGGUCUUCCGa----CGCCGca-UGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 124288 0.7 0.660883
Target:  5'- cGCCGGGAGGCgagucGCGGCcggACG-GCg- -3'
miRNA:   3'- -CGGUCUUCCGa----CGCCGca-UGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 97679 0.7 0.664939
Target:  5'- gGCCAGAgaGGGCgccgccGCGGUGUugGUcauaggcaaccgaggGCUUg -3'
miRNA:   3'- -CGGUCU--UCCGa-----CGCCGCAugCA---------------CGAG- -5'
24400 3' -57.2 NC_005264.1 + 162817 0.69 0.711141
Target:  5'- aGCUA--GGGCcGCGGCGUuaugGCGUGC-Cg -3'
miRNA:   3'- -CGGUcuUCCGaCGCCGCA----UGCACGaG- -5'
24400 3' -57.2 NC_005264.1 + 106604 0.69 0.711141
Target:  5'- gGCUuuGGGGUcGCGGCGUACGUGa-- -3'
miRNA:   3'- -CGGucUUCCGaCGCCGCAUGCACgag -5'
24400 3' -57.2 NC_005264.1 + 31179 0.69 0.721028
Target:  5'- gGCCGGAGGGCgaGCGaGUGggACGggggGCUg -3'
miRNA:   3'- -CGGUCUUCCGa-CGC-CGCa-UGCa---CGAg -5'
24400 3' -57.2 NC_005264.1 + 150206 0.69 0.721028
Target:  5'- gGCCGGAGGGCgaGCGaGUGggACGggggGCUg -3'
miRNA:   3'- -CGGUCUUCCGa-CGC-CGCa-UGCa---CGAg -5'
24400 3' -57.2 NC_005264.1 + 100023 0.69 0.73084
Target:  5'- --aAGAAGGCcGCGGCG-GCGcUGCUg -3'
miRNA:   3'- cggUCUUCCGaCGCCGCaUGC-ACGAg -5'
24400 3' -57.2 NC_005264.1 + 81107 0.68 0.740568
Target:  5'- cGCCAGAAucGGUacgcGUGGCGUGCGaUGaCUUa -3'
miRNA:   3'- -CGGUCUU--CCGa---CGCCGCAUGC-AC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.