Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24400 | 3' | -57.2 | NC_005264.1 | + | 49613 | 0.68 | 0.750203 |
Target: 5'- -aCGGggGGCgcucgGUGGgGUACcagggggccaagGUGCUCg -3' miRNA: 3'- cgGUCuuCCGa----CGCCgCAUG------------CACGAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 149439 | 0.68 | 0.769155 |
Target: 5'- cGCCGGugcgGAGaGCUGCGGCGgaggAgGU-CUCg -3' miRNA: 3'- -CGGUC----UUC-CGACGCCGCa---UgCAcGAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 30412 | 0.68 | 0.769155 |
Target: 5'- cGCCGGugcgGAGaGCUGCGGCGgaggAgGU-CUCg -3' miRNA: 3'- -CGGUC----UUC-CGACGCCGCa---UgCAcGAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 22164 | 0.68 | 0.778454 |
Target: 5'- uGCUu-AAGGUUGCGGCGgcCGUGgUUg -3' miRNA: 3'- -CGGucUUCCGACGCCGCauGCACgAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 123494 | 0.68 | 0.787624 |
Target: 5'- gGCCGcgcGGUUGCugGGCG-AUGUGCUCg -3' miRNA: 3'- -CGGUcuuCCGACG--CCGCaUGCACGAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 39487 | 0.67 | 0.802891 |
Target: 5'- cGCCAGggGcaggccugcGCUGUGGUGgacgccagggacgaUaaggACGUGCUCu -3' miRNA: 3'- -CGGUCuuC---------CGACGCCGC--------------A----UGCACGAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 158514 | 0.67 | 0.802891 |
Target: 5'- cGCCAGggGcaggccugcGCUGUGGUGgacgccagggacgaUaaggACGUGCUCu -3' miRNA: 3'- -CGGUCuuC---------CGACGCCGC--------------A----UGCACGAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 25174 | 0.67 | 0.803775 |
Target: 5'- gGCCacGGAAGGCaagcaucugaggGCcGCGUACGUGUUg -3' miRNA: 3'- -CGG--UCUUCCGa-----------CGcCGCAUGCACGAg -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 125852 | 0.67 | 0.80554 |
Target: 5'- uGCCGG-AGGCgGCGGCGacUAUG-GCg- -3' miRNA: 3'- -CGGUCuUCCGaCGCCGC--AUGCaCGag -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 135449 | 0.67 | 0.80554 |
Target: 5'- cGCCuaAGAGGGUaGaGGCGaggaucaucaaUACGUGCUCc -3' miRNA: 3'- -CGG--UCUUCCGaCgCCGC-----------AUGCACGAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 6826 | 0.67 | 0.80554 |
Target: 5'- uGCCGG-AGGCgGCGGCGacUAUG-GCg- -3' miRNA: 3'- -CGGUCuUCCGaCGCCGC--AUGCaCGag -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 139416 | 0.67 | 0.814269 |
Target: 5'- uCgAGAcGGGCaccGCuGGCGUacGCGUGCUCg -3' miRNA: 3'- cGgUCU-UCCGa--CG-CCGCA--UGCACGAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 136229 | 0.67 | 0.822835 |
Target: 5'- aCgGGAGGGCcgagGUGGCG-ACGgacacgGCUCa -3' miRNA: 3'- cGgUCUUCCGa---CGCCGCaUGCa-----CGAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 151301 | 0.67 | 0.83123 |
Target: 5'- cCCGGggGGCa---GCGUACGUGUUa -3' miRNA: 3'- cGGUCuuCCGacgcCGCAUGCACGAg -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 21355 | 0.66 | 0.839445 |
Target: 5'- gGCCGGAugAGGCUGUaGC---CGUGUUCa -3' miRNA: 3'- -CGGUCU--UCCGACGcCGcauGCACGAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 95753 | 0.66 | 0.839445 |
Target: 5'- gGCCAuGggGGaucuguacGCGGCGUGCGaguaCUCg -3' miRNA: 3'- -CGGU-CuuCCga------CGCCGCAUGCac--GAG- -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 17361 | 0.66 | 0.839445 |
Target: 5'- cGgCAGcuGGCgGCGGCGcggucugugUACGUGCg- -3' miRNA: 3'- -CgGUCuuCCGaCGCCGC---------AUGCACGag -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 17683 | 0.66 | 0.839445 |
Target: 5'- gGCgCAGccGAGGCcGCGGCGgcuCGUGUc- -3' miRNA: 3'- -CG-GUC--UUCCGaCGCCGCau-GCACGag -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 34325 | 0.66 | 0.847474 |
Target: 5'- cGCCuucGAGGCgGCGGUG-AUGUGCc- -3' miRNA: 3'- -CGGuc-UUCCGaCGCCGCaUGCACGag -5' |
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24400 | 3' | -57.2 | NC_005264.1 | + | 91016 | 0.66 | 0.847474 |
Target: 5'- -aCGGAGGacccauGCUGCcGCGUAUGUGCg- -3' miRNA: 3'- cgGUCUUC------CGACGcCGCAUGCACGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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