miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 3' -57.2 NC_005264.1 + 125852 0.67 0.80554
Target:  5'- uGCCGG-AGGCgGCGGCGacUAUG-GCg- -3'
miRNA:   3'- -CGGUCuUCCGaCGCCGC--AUGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 6826 0.67 0.80554
Target:  5'- uGCCGG-AGGCgGCGGCGacUAUG-GCg- -3'
miRNA:   3'- -CGGUCuUCCGaCGCCGC--AUGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 135449 0.67 0.80554
Target:  5'- cGCCuaAGAGGGUaGaGGCGaggaucaucaaUACGUGCUCc -3'
miRNA:   3'- -CGG--UCUUCCGaCgCCGC-----------AUGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 25174 0.67 0.803775
Target:  5'- gGCCacGGAAGGCaagcaucugaggGCcGCGUACGUGUUg -3'
miRNA:   3'- -CGG--UCUUCCGa-----------CGcCGCAUGCACGAg -5'
24400 3' -57.2 NC_005264.1 + 158514 0.67 0.802891
Target:  5'- cGCCAGggGcaggccugcGCUGUGGUGgacgccagggacgaUaaggACGUGCUCu -3'
miRNA:   3'- -CGGUCuuC---------CGACGCCGC--------------A----UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 39487 0.67 0.802891
Target:  5'- cGCCAGggGcaggccugcGCUGUGGUGgacgccagggacgaUaaggACGUGCUCu -3'
miRNA:   3'- -CGGUCuuC---------CGACGCCGC--------------A----UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 123494 0.68 0.787624
Target:  5'- gGCCGcgcGGUUGCugGGCG-AUGUGCUCg -3'
miRNA:   3'- -CGGUcuuCCGACG--CCGCaUGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 22164 0.68 0.778454
Target:  5'- uGCUu-AAGGUUGCGGCGgcCGUGgUUg -3'
miRNA:   3'- -CGGucUUCCGACGCCGCauGCACgAG- -5'
24400 3' -57.2 NC_005264.1 + 149439 0.68 0.769155
Target:  5'- cGCCGGugcgGAGaGCUGCGGCGgaggAgGU-CUCg -3'
miRNA:   3'- -CGGUC----UUC-CGACGCCGCa---UgCAcGAG- -5'
24400 3' -57.2 NC_005264.1 + 30412 0.68 0.769155
Target:  5'- cGCCGGugcgGAGaGCUGCGGCGgaggAgGU-CUCg -3'
miRNA:   3'- -CGGUC----UUC-CGACGCCGCa---UgCAcGAG- -5'
24400 3' -57.2 NC_005264.1 + 49613 0.68 0.750203
Target:  5'- -aCGGggGGCgcucgGUGGgGUACcagggggccaagGUGCUCg -3'
miRNA:   3'- cgGUCuuCCGa----CGCCgCAUG------------CACGAG- -5'
24400 3' -57.2 NC_005264.1 + 81107 0.68 0.740568
Target:  5'- cGCCAGAAucGGUacgcGUGGCGUGCGaUGaCUUa -3'
miRNA:   3'- -CGGUCUU--CCGa---CGCCGCAUGC-AC-GAG- -5'
24400 3' -57.2 NC_005264.1 + 100023 0.69 0.73084
Target:  5'- --aAGAAGGCcGCGGCG-GCGcUGCUg -3'
miRNA:   3'- cggUCUUCCGaCGCCGCaUGC-ACGAg -5'
24400 3' -57.2 NC_005264.1 + 31179 0.69 0.721028
Target:  5'- gGCCGGAGGGCgaGCGaGUGggACGggggGCUg -3'
miRNA:   3'- -CGGUCUUCCGa-CGC-CGCa-UGCa---CGAg -5'
24400 3' -57.2 NC_005264.1 + 150206 0.69 0.721028
Target:  5'- gGCCGGAGGGCgaGCGaGUGggACGggggGCUg -3'
miRNA:   3'- -CGGUCUUCCGa-CGC-CGCa-UGCa---CGAg -5'
24400 3' -57.2 NC_005264.1 + 162817 0.69 0.711141
Target:  5'- aGCUA--GGGCcGCGGCGUuaugGCGUGC-Cg -3'
miRNA:   3'- -CGGUcuUCCGaCGCCGCA----UGCACGaG- -5'
24400 3' -57.2 NC_005264.1 + 106604 0.69 0.711141
Target:  5'- gGCUuuGGGGUcGCGGCGUACGUGa-- -3'
miRNA:   3'- -CGGucUUCCGaCGCCGCAUGCACgag -5'
24400 3' -57.2 NC_005264.1 + 97679 0.7 0.664939
Target:  5'- gGCCAGAgaGGGCgccgccGCGGUGUugGUcauaggcaaccgaggGCUUg -3'
miRNA:   3'- -CGGUCU--UCCGa-----CGCCGCAugCA---------------CGAG- -5'
24400 3' -57.2 NC_005264.1 + 124288 0.7 0.660883
Target:  5'- cGCCGGGAGGCgagucGCGGCcggACG-GCg- -3'
miRNA:   3'- -CGGUCUUCCGa----CGCCGca-UGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 5261 0.7 0.660883
Target:  5'- cGCCGGGAGGCgagucGCGGCcggACG-GCg- -3'
miRNA:   3'- -CGGUCUUCCGa----CGCCGca-UGCaCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.