miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 3' -57.2 NC_005264.1 + 91016 0.66 0.847474
Target:  5'- -aCGGAGGacccauGCUGCcGCGUAUGUGCg- -3'
miRNA:   3'- cgGUCUUC------CGACGcCGCAUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 95753 0.66 0.839445
Target:  5'- gGCCAuGggGGaucuguacGCGGCGUGCGaguaCUCg -3'
miRNA:   3'- -CGGU-CuuCCga------CGCCGCAUGCac--GAG- -5'
24400 3' -57.2 NC_005264.1 + 97515 0.72 0.549641
Target:  5'- uGCCAGGAgcugccgcGGCUGUGGCGUggcaGCGgGCa- -3'
miRNA:   3'- -CGGUCUU--------CCGACGCCGCA----UGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 97586 0.7 0.654793
Target:  5'- aGCUAGAAccguaccgcuuccucGGCcGCGGCGgcUACG-GCUCa -3'
miRNA:   3'- -CGGUCUU---------------CCGaCGCCGC--AUGCaCGAG- -5'
24400 3' -57.2 NC_005264.1 + 97679 0.7 0.664939
Target:  5'- gGCCAGAgaGGGCgccgccGCGGUGUugGUcauaggcaaccgaggGCUUg -3'
miRNA:   3'- -CGGUCU--UCCGa-----CGCCGCAugCA---------------CGAG- -5'
24400 3' -57.2 NC_005264.1 + 100023 0.69 0.73084
Target:  5'- --aAGAAGGCcGCGGCG-GCGcUGCUg -3'
miRNA:   3'- cggUCUUCCGaCGCCGCaUGC-ACGAg -5'
24400 3' -57.2 NC_005264.1 + 106071 0.66 0.862946
Target:  5'- uGCCGG--GGUuuccuUGCuuGGCGUGCGUGC-Ca -3'
miRNA:   3'- -CGGUCuuCCG-----ACG--CCGCAUGCACGaG- -5'
24400 3' -57.2 NC_005264.1 + 106604 0.69 0.711141
Target:  5'- gGCUuuGGGGUcGCGGCGUACGUGa-- -3'
miRNA:   3'- -CGGucUUCCGaCGCCGCAUGCACgag -5'
24400 3' -57.2 NC_005264.1 + 107873 0.66 0.877596
Target:  5'- uGCCGGAAGGUcgUGCauuGCcauuaGCGUGUUCa -3'
miRNA:   3'- -CGGUCUUCCG--ACGc--CGca---UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 112992 1.12 0.001338
Target:  5'- cGCCAGAAGGCUGCGGCGUACGUGCUCg -3'
miRNA:   3'- -CGGUCUUCCGACGCCGCAUGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 117839 0.66 0.862946
Target:  5'- --gGGGAGGC-GCGGCGga-GUGCg- -3'
miRNA:   3'- cggUCUUCCGaCGCCGCaugCACGag -5'
24400 3' -57.2 NC_005264.1 + 119488 0.66 0.870377
Target:  5'- uGCUuguGGAuguGGCUGCGcaggGCGUGCUCc -3'
miRNA:   3'- -CGG---UCUu--CCGACGCcgcaUGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 123494 0.68 0.787624
Target:  5'- gGCCGcgcGGUUGCugGGCG-AUGUGCUCg -3'
miRNA:   3'- -CGGUcuuCCGACG--CCGCaUGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 123630 0.66 0.870377
Target:  5'- cGCCAGcgccGCgGCGGCGUaggcGCGUuCUCg -3'
miRNA:   3'- -CGGUCuuc-CGaCGCCGCA----UGCAcGAG- -5'
24400 3' -57.2 NC_005264.1 + 124288 0.7 0.660883
Target:  5'- cGCCGGGAGGCgagucGCGGCcggACG-GCg- -3'
miRNA:   3'- -CGGUCUUCCGa----CGCCGca-UGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 125849 0.72 0.549641
Target:  5'- gGCCAGcAGGGCUGCugagucugaaaGGCGggUugGUGCa- -3'
miRNA:   3'- -CGGUC-UUCCGACG-----------CCGC--AugCACGag -5'
24400 3' -57.2 NC_005264.1 + 125852 0.67 0.80554
Target:  5'- uGCCGG-AGGCgGCGGCGacUAUG-GCg- -3'
miRNA:   3'- -CGGUCuUCCGaCGCCGC--AUGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 129035 0.7 0.620211
Target:  5'- uGCCGGcgagccGGUccaaaGCGGCGUGCGcgGCUCg -3'
miRNA:   3'- -CGGUCuu----CCGa----CGCCGCAUGCa-CGAG- -5'
24400 3' -57.2 NC_005264.1 + 129540 0.66 0.862946
Target:  5'- uGCgGGcguGGGCUuaGGCGUcgccGCGUGgUCg -3'
miRNA:   3'- -CGgUCu--UCCGAcgCCGCA----UGCACgAG- -5'
24400 3' -57.2 NC_005264.1 + 131596 0.71 0.56962
Target:  5'- gGUguGGAGGgaGCGGCGcGCGUGggCg -3'
miRNA:   3'- -CGguCUUCCgaCGCCGCaUGCACgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.