miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 3' -57.2 NC_005264.1 + 134964 0.66 0.85531
Target:  5'- gGCCAGAcacgacaaaaAGGCgGCGGCGcaUugG-GCg- -3'
miRNA:   3'- -CGGUCU----------UCCGaCGCCGC--AugCaCGag -5'
24400 3' -57.2 NC_005264.1 + 135449 0.67 0.80554
Target:  5'- cGCCuaAGAGGGUaGaGGCGaggaucaucaaUACGUGCUCc -3'
miRNA:   3'- -CGG--UCUUCCGaCgCCGC-----------AUGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 136229 0.67 0.822835
Target:  5'- aCgGGAGGGCcgagGUGGCG-ACGgacacgGCUCa -3'
miRNA:   3'- cGgUCUUCCGa---CGCCGCaUGCa-----CGAG- -5'
24400 3' -57.2 NC_005264.1 + 138397 0.72 0.529885
Target:  5'- aGCCAGucgcuauGGGCcauaGCGGCGagaACGUGCUUu -3'
miRNA:   3'- -CGGUCu------UCCGa---CGCCGCa--UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 139416 0.67 0.814269
Target:  5'- uCgAGAcGGGCaccGCuGGCGUacGCGUGCUCg -3'
miRNA:   3'- cGgUCU-UCCGa--CG-CCGCA--UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 145981 0.66 0.870377
Target:  5'- cGCCGacaaggucaacGAGGGCcucuaCGGCGUGCGcguuauggGCUCg -3'
miRNA:   3'- -CGGU-----------CUUCCGac---GCCGCAUGCa-------CGAG- -5'
24400 3' -57.2 NC_005264.1 + 149439 0.68 0.769155
Target:  5'- cGCCGGugcgGAGaGCUGCGGCGgaggAgGU-CUCg -3'
miRNA:   3'- -CGGUC----UUC-CGACGCCGCa---UgCAcGAG- -5'
24400 3' -57.2 NC_005264.1 + 150206 0.69 0.721028
Target:  5'- gGCCGGAGGGCgaGCGaGUGggACGggggGCUg -3'
miRNA:   3'- -CGGUCUUCCGa-CGC-CGCa-UGCa---CGAg -5'
24400 3' -57.2 NC_005264.1 + 151301 0.67 0.83123
Target:  5'- cCCGGggGGCa---GCGUACGUGUUa -3'
miRNA:   3'- cGGUCuuCCGacgcCGCAUGCACGAg -5'
24400 3' -57.2 NC_005264.1 + 158514 0.67 0.802891
Target:  5'- cGCCAGggGcaggccugcGCUGUGGUGgacgccagggacgaUaaggACGUGCUCu -3'
miRNA:   3'- -CGGUCuuC---------CGACGCCGC--------------A----UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 162817 0.69 0.711141
Target:  5'- aGCUA--GGGCcGCGGCGUuaugGCGUGC-Cg -3'
miRNA:   3'- -CGGUcuUCCGaCGCCGCA----UGCACGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.