miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 3' -57.2 NC_005264.1 + 117839 0.66 0.862946
Target:  5'- --gGGGAGGC-GCGGCGga-GUGCg- -3'
miRNA:   3'- cggUCUUCCGaCGCCGCaugCACGag -5'
24400 3' -57.2 NC_005264.1 + 112992 1.12 0.001338
Target:  5'- cGCCAGAAGGCUGCGGCGUACGUGCUCg -3'
miRNA:   3'- -CGGUCUUCCGACGCCGCAUGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 107873 0.66 0.877596
Target:  5'- uGCCGGAAGGUcgUGCauuGCcauuaGCGUGUUCa -3'
miRNA:   3'- -CGGUCUUCCG--ACGc--CGca---UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 106604 0.69 0.711141
Target:  5'- gGCUuuGGGGUcGCGGCGUACGUGa-- -3'
miRNA:   3'- -CGGucUUCCGaCGCCGCAUGCACgag -5'
24400 3' -57.2 NC_005264.1 + 106071 0.66 0.862946
Target:  5'- uGCCGG--GGUuuccuUGCuuGGCGUGCGUGC-Ca -3'
miRNA:   3'- -CGGUCuuCCG-----ACG--CCGCAUGCACGaG- -5'
24400 3' -57.2 NC_005264.1 + 100023 0.69 0.73084
Target:  5'- --aAGAAGGCcGCGGCG-GCGcUGCUg -3'
miRNA:   3'- cggUCUUCCGaCGCCGCaUGC-ACGAg -5'
24400 3' -57.2 NC_005264.1 + 97679 0.7 0.664939
Target:  5'- gGCCAGAgaGGGCgccgccGCGGUGUugGUcauaggcaaccgaggGCUUg -3'
miRNA:   3'- -CGGUCU--UCCGa-----CGCCGCAugCA---------------CGAG- -5'
24400 3' -57.2 NC_005264.1 + 97586 0.7 0.654793
Target:  5'- aGCUAGAAccguaccgcuuccucGGCcGCGGCGgcUACG-GCUCa -3'
miRNA:   3'- -CGGUCUU---------------CCGaCGCCGC--AUGCaCGAG- -5'
24400 3' -57.2 NC_005264.1 + 97515 0.72 0.549641
Target:  5'- uGCCAGGAgcugccgcGGCUGUGGCGUggcaGCGgGCa- -3'
miRNA:   3'- -CGGUCUU--------CCGACGCCGCA----UGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 95753 0.66 0.839445
Target:  5'- gGCCAuGggGGaucuguacGCGGCGUGCGaguaCUCg -3'
miRNA:   3'- -CGGU-CuuCCga------CGCCGCAUGCac--GAG- -5'
24400 3' -57.2 NC_005264.1 + 91016 0.66 0.847474
Target:  5'- -aCGGAGGacccauGCUGCcGCGUAUGUGCg- -3'
miRNA:   3'- cgGUCUUC------CGACGcCGCAUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 81107 0.68 0.740568
Target:  5'- cGCCAGAAucGGUacgcGUGGCGUGCGaUGaCUUa -3'
miRNA:   3'- -CGGUCUU--CCGa---CGCCGCAUGC-AC-GAG- -5'
24400 3' -57.2 NC_005264.1 + 80456 0.75 0.392528
Target:  5'- -gCAGAAGGCagcgGUGGUGUGCGaagUGCUCc -3'
miRNA:   3'- cgGUCUUCCGa---CGCCGCAUGC---ACGAG- -5'
24400 3' -57.2 NC_005264.1 + 66480 0.72 0.558607
Target:  5'- gGCCAGAcucaaugcuuggcGGGCUgcGCGGCGcgcucgACGaGCUCg -3'
miRNA:   3'- -CGGUCU-------------UCCGA--CGCCGCa-----UGCaCGAG- -5'
24400 3' -57.2 NC_005264.1 + 62671 0.66 0.869643
Target:  5'- cGCCaAGAucGCUuCGGCGUcagcgcgaagaacGCGUGCUa -3'
miRNA:   3'- -CGG-UCUucCGAcGCCGCA-------------UGCACGAg -5'
24400 3' -57.2 NC_005264.1 + 56897 0.75 0.358392
Target:  5'- aCCGGGaacuGGGCgagcauuaugggGCGGCGUACGUGCg- -3'
miRNA:   3'- cGGUCU----UCCGa-----------CGCCGCAUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 49613 0.68 0.750203
Target:  5'- -aCGGggGGCgcucgGUGGgGUACcagggggccaagGUGCUCg -3'
miRNA:   3'- cgGUCuuCCGa----CGCCgCAUG------------CACGAG- -5'
24400 3' -57.2 NC_005264.1 + 41732 0.89 0.051652
Target:  5'- cGCCAGgcGGCaGCGGCGUAUGUGCUg -3'
miRNA:   3'- -CGGUCuuCCGaCGCCGCAUGCACGAg -5'
24400 3' -57.2 NC_005264.1 + 39487 0.67 0.802891
Target:  5'- cGCCAGggGcaggccugcGCUGUGGUGgacgccagggacgaUaaggACGUGCUCu -3'
miRNA:   3'- -CGGUCuuC---------CGACGCCGC--------------A----UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 34325 0.66 0.847474
Target:  5'- cGCCuucGAGGCgGCGGUG-AUGUGCc- -3'
miRNA:   3'- -CGGuc-UUCCGaCGCCGCaUGCACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.