miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 3' -57.2 NC_005264.1 + 31179 0.69 0.721028
Target:  5'- gGCCGGAGGGCgaGCGaGUGggACGggggGCUg -3'
miRNA:   3'- -CGGUCUUCCGa-CGC-CGCa-UGCa---CGAg -5'
24400 3' -57.2 NC_005264.1 + 30412 0.68 0.769155
Target:  5'- cGCCGGugcgGAGaGCUGCGGCGgaggAgGU-CUCg -3'
miRNA:   3'- -CGGUC----UUC-CGACGCCGCa---UgCAcGAG- -5'
24400 3' -57.2 NC_005264.1 + 29894 0.66 0.847474
Target:  5'- uGCCGcGAAGGCgUGCGGCGcUACcccgucgGCg- -3'
miRNA:   3'- -CGGU-CUUCCG-ACGCCGC-AUGca-----CGag -5'
24400 3' -57.2 NC_005264.1 + 25174 0.67 0.803775
Target:  5'- gGCCacGGAAGGCaagcaucugaggGCcGCGUACGUGUUg -3'
miRNA:   3'- -CGG--UCUUCCGa-----------CGcCGCAUGCACGAg -5'
24400 3' -57.2 NC_005264.1 + 22164 0.68 0.778454
Target:  5'- uGCUu-AAGGUUGCGGCGgcCGUGgUUg -3'
miRNA:   3'- -CGGucUUCCGACGCCGCauGCACgAG- -5'
24400 3' -57.2 NC_005264.1 + 21355 0.66 0.839445
Target:  5'- gGCCGGAugAGGCUGUaGC---CGUGUUCa -3'
miRNA:   3'- -CGGUCU--UCCGACGcCGcauGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 17683 0.66 0.839445
Target:  5'- gGCgCAGccGAGGCcGCGGCGgcuCGUGUc- -3'
miRNA:   3'- -CG-GUC--UUCCGaCGCCGCau-GCACGag -5'
24400 3' -57.2 NC_005264.1 + 17361 0.66 0.839445
Target:  5'- cGgCAGcuGGCgGCGGCGcggucugugUACGUGCg- -3'
miRNA:   3'- -CgGUCuuCCGaCGCCGC---------AUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 6826 0.67 0.80554
Target:  5'- uGCCGG-AGGCgGCGGCGacUAUG-GCg- -3'
miRNA:   3'- -CGGUCuUCCGaCGCCGC--AUGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 5261 0.7 0.660883
Target:  5'- cGCCGGGAGGCgagucGCGGCcggACG-GCg- -3'
miRNA:   3'- -CGGUCUUCCGa----CGCCGca-UGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 4603 0.66 0.870377
Target:  5'- cGCCAGcgccGCgGCGGCGUaggcGCGUuCUCg -3'
miRNA:   3'- -CGGUCuuc-CGaCGCCGCA----UGCAcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.