miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 3' -57.2 NC_005264.1 + 107873 0.66 0.877596
Target:  5'- uGCCGGAAGGUcgUGCauuGCcauuaGCGUGUUCa -3'
miRNA:   3'- -CGGUCUUCCG--ACGc--CGca---UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 17683 0.66 0.839445
Target:  5'- gGCgCAGccGAGGCcGCGGCGgcuCGUGUc- -3'
miRNA:   3'- -CG-GUC--UUCCGaCGCCGCau-GCACGag -5'
24400 3' -57.2 NC_005264.1 + 91016 0.66 0.847474
Target:  5'- -aCGGAGGacccauGCUGCcGCGUAUGUGCg- -3'
miRNA:   3'- cgGUCUUC------CGACGcCGCAUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 29894 0.66 0.847474
Target:  5'- uGCCGcGAAGGCgUGCGGCGcUACcccgucgGCg- -3'
miRNA:   3'- -CGGU-CUUCCG-ACGCCGC-AUGca-----CGag -5'
24400 3' -57.2 NC_005264.1 + 34325 0.66 0.847474
Target:  5'- cGCCuucGAGGCgGCGGUG-AUGUGCc- -3'
miRNA:   3'- -CGGuc-UUCCGaCGCCGCaUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 106071 0.66 0.862946
Target:  5'- uGCCGG--GGUuuccuUGCuuGGCGUGCGUGC-Ca -3'
miRNA:   3'- -CGGUCuuCCG-----ACG--CCGCAUGCACGaG- -5'
24400 3' -57.2 NC_005264.1 + 62671 0.66 0.869643
Target:  5'- cGCCaAGAucGCUuCGGCGUcagcgcgaagaacGCGUGCUa -3'
miRNA:   3'- -CGG-UCUucCGAcGCCGCA-------------UGCACGAg -5'
24400 3' -57.2 NC_005264.1 + 123630 0.66 0.870377
Target:  5'- cGCCAGcgccGCgGCGGCGUaggcGCGUuCUCg -3'
miRNA:   3'- -CGGUCuuc-CGaCGCCGCA----UGCAcGAG- -5'
24400 3' -57.2 NC_005264.1 + 145981 0.66 0.870377
Target:  5'- cGCCGacaaggucaacGAGGGCcucuaCGGCGUGCGcguuauggGCUCg -3'
miRNA:   3'- -CGGU-----------CUUCCGac---GCCGCAUGCa-------CGAG- -5'
24400 3' -57.2 NC_005264.1 + 17361 0.66 0.839445
Target:  5'- cGgCAGcuGGCgGCGGCGcggucugugUACGUGCg- -3'
miRNA:   3'- -CgGUCuuCCGaCGCCGC---------AUGCACGag -5'
24400 3' -57.2 NC_005264.1 + 136229 0.67 0.822835
Target:  5'- aCgGGAGGGCcgagGUGGCG-ACGgacacgGCUCa -3'
miRNA:   3'- cGgUCUUCCGa---CGCCGCaUGCa-----CGAG- -5'
24400 3' -57.2 NC_005264.1 + 125852 0.67 0.80554
Target:  5'- uGCCGG-AGGCgGCGGCGacUAUG-GCg- -3'
miRNA:   3'- -CGGUCuUCCGaCGCCGC--AUGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 138397 0.72 0.529885
Target:  5'- aGCCAGucgcuauGGGCcauaGCGGCGagaACGUGCUUu -3'
miRNA:   3'- -CGGUCu------UCCGa---CGCCGCa--UGCACGAG- -5'
24400 3' -57.2 NC_005264.1 + 97586 0.7 0.654793
Target:  5'- aGCUAGAAccguaccgcuuccucGGCcGCGGCGgcUACG-GCUCa -3'
miRNA:   3'- -CGGUCUU---------------CCGaCGCCGC--AUGCaCGAG- -5'
24400 3' -57.2 NC_005264.1 + 124288 0.7 0.660883
Target:  5'- cGCCGGGAGGCgagucGCGGCcggACG-GCg- -3'
miRNA:   3'- -CGGUCUUCCGa----CGCCGca-UGCaCGag -5'
24400 3' -57.2 NC_005264.1 + 106604 0.69 0.711141
Target:  5'- gGCUuuGGGGUcGCGGCGUACGUGa-- -3'
miRNA:   3'- -CGGucUUCCGaCGCCGCAUGCACgag -5'
24400 3' -57.2 NC_005264.1 + 150206 0.69 0.721028
Target:  5'- gGCCGGAGGGCgaGCGaGUGggACGggggGCUg -3'
miRNA:   3'- -CGGUCUUCCGa-CGC-CGCa-UGCa---CGAg -5'
24400 3' -57.2 NC_005264.1 + 49613 0.68 0.750203
Target:  5'- -aCGGggGGCgcucgGUGGgGUACcagggggccaagGUGCUCg -3'
miRNA:   3'- cgGUCuuCCGa----CGCCgCAUG------------CACGAG- -5'
24400 3' -57.2 NC_005264.1 + 149439 0.68 0.769155
Target:  5'- cGCCGGugcgGAGaGCUGCGGCGgaggAgGU-CUCg -3'
miRNA:   3'- -CGGUC----UUC-CGACGCCGCa---UgCAcGAG- -5'
24400 3' -57.2 NC_005264.1 + 158514 0.67 0.802891
Target:  5'- cGCCAGggGcaggccugcGCUGUGGUGgacgccagggacgaUaaggACGUGCUCu -3'
miRNA:   3'- -CGGUCuuC---------CGACGCCGC--------------A----UGCACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.