miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 5' -53.6 NC_005264.1 + 133353 0.66 0.966551
Target:  5'- uAGAGAc--CGCGGCCCU---CCUCGa -3'
miRNA:   3'- uUUUCUuauGCGCCGGGAcguGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 17046 0.66 0.966551
Target:  5'- ---uGAGUACucuGCGGUCCUuauucGCGCaCUCGg -3'
miRNA:   3'- uuuuCUUAUG---CGCCGGGA-----CGUG-GAGC- -5'
24400 5' -53.6 NC_005264.1 + 48340 0.66 0.966551
Target:  5'- uGGGGAGUugGCGcacGCCaugGCgGCCUCGu -3'
miRNA:   3'- uUUUCUUAugCGC---CGGga-CG-UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 90743 0.66 0.965569
Target:  5'- cGAGAG-AUACGCGGCcauuacgaccgcgaCCaGCACgUCGu -3'
miRNA:   3'- -UUUUCuUAUGCGCCG--------------GGaCGUGgAGC- -5'
24400 5' -53.6 NC_005264.1 + 126398 0.66 0.963888
Target:  5'- gAGGAGAGgcaagucgucucCGCGGCCUgcagguacuugggGCGCCUCa -3'
miRNA:   3'- -UUUUCUUau----------GCGCCGGGa------------CGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 97892 0.66 0.9632
Target:  5'- cAGAGAAUucCGCGGCCUcGCGaaggcUCUCGc -3'
miRNA:   3'- uUUUCUUAu-GCGCCGGGaCGU-----GGAGC- -5'
24400 5' -53.6 NC_005264.1 + 70793 0.66 0.9632
Target:  5'- cAAGGA--GCGCGGCCCaccgACCUCc -3'
miRNA:   3'- uUUUCUuaUGCGCCGGGacg-UGGAGc -5'
24400 5' -53.6 NC_005264.1 + 126630 0.66 0.95962
Target:  5'- --cAGAAaACGC-GUCgaGCACCUCGg -3'
miRNA:   3'- uuuUCUUaUGCGcCGGgaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 60975 0.66 0.95962
Target:  5'- --uGGugguCGCGGUguaCCUGCugCUCGg -3'
miRNA:   3'- uuuUCuuauGCGCCG---GGACGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 162736 0.66 0.955808
Target:  5'- aAAAGGAAacucgaGCGGCCCgcgUGCGCCg-- -3'
miRNA:   3'- -UUUUCUUaug---CGCCGGG---ACGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 13958 0.66 0.955808
Target:  5'- cGAGAGAuaaGCGCGGCCaaagaUGCGuacgcucuCCUCu -3'
miRNA:   3'- -UUUUCUua-UGCGCCGGg----ACGU--------GGAGc -5'
24400 5' -53.6 NC_005264.1 + 43710 0.66 0.955808
Target:  5'- aAAAGGAAacucgaGCGGCCCgcgUGCGCCg-- -3'
miRNA:   3'- -UUUUCUUaug---CGCCGGG---ACGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 92724 0.66 0.955414
Target:  5'- -cGGGAGUACGCGGCagcucgauaagguCCUccGCGCCg-- -3'
miRNA:   3'- uuUUCUUAUGCGCCG-------------GGA--CGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 67639 0.66 0.953408
Target:  5'- -cAGGggUguccuGCGCGGCCCgUcuucguuauggcacgGCACCUUGc -3'
miRNA:   3'- uuUUCuuA-----UGCGCCGGG-A---------------CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 39431 0.66 0.951759
Target:  5'- --cAGAcUACuagcugGCGGUUCUGCAUCUCGc -3'
miRNA:   3'- uuuUCUuAUG------CGCCGGGACGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 101041 0.66 0.947468
Target:  5'- ---cGAugccCGCGGCCCgguggaGCugCUCGa -3'
miRNA:   3'- uuuuCUuau-GCGCCGGGa-----CGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 51104 0.66 0.947468
Target:  5'- ----cGGUGCuGCGGUCUgcucGCGCCUCGa -3'
miRNA:   3'- uuuucUUAUG-CGCCGGGa---CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 4779 0.66 0.947468
Target:  5'- ------cUGCGCGGCgCCguucgcGCACCUCc -3'
miRNA:   3'- uuuucuuAUGCGCCG-GGa-----CGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 92652 0.67 0.942933
Target:  5'- -------cGCGUGGCCCUcGCGCCg-- -3'
miRNA:   3'- uuuucuuaUGCGCCGGGA-CGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 67302 0.67 0.942933
Target:  5'- cGAAGggUAuCGCGGCg--GCGCCUUc -3'
miRNA:   3'- uUUUCuuAU-GCGCCGggaCGUGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.