Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24400 | 5' | -53.6 | NC_005264.1 | + | 87303 | 0.75 | 0.548919 |
Target: 5'- cGGGAGcGUACGCGGCCCgaaacaucacuauacGCACgCUCGg -3' miRNA: 3'- -UUUUCuUAUGCGCCGGGa--------------CGUG-GAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 78648 | 0.76 | 0.507511 |
Target: 5'- -------cGCgGCGGCCCUGUGCCUCGu -3' miRNA: 3'- uuuucuuaUG-CGCCGGGACGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 114699 | 0.8 | 0.322415 |
Target: 5'- -cAGGAuUGCGCGGUCUcgUGCGCCUCGa -3' miRNA: 3'- uuUUCUuAUGCGCCGGG--ACGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 113026 | 1.07 | 0.005873 |
Target: 5'- aAAAAGAAUACGCGGCCCUGCACCUCGa -3' miRNA: 3'- -UUUUCUUAUGCGCCGGGACGUGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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