miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 5' -53.6 NC_005264.1 + 113026 1.07 0.005873
Target:  5'- aAAAAGAAUACGCGGCCCUGCACCUCGa -3'
miRNA:   3'- -UUUUCUUAUGCGCCGGGACGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 114699 0.8 0.322415
Target:  5'- -cAGGAuUGCGCGGUCUcgUGCGCCUCGa -3'
miRNA:   3'- uuUUCUuAUGCGCCGGG--ACGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 78648 0.76 0.507511
Target:  5'- -------cGCgGCGGCCCUGUGCCUCGu -3'
miRNA:   3'- uuuucuuaUG-CGCCGGGACGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 87303 0.75 0.548919
Target:  5'- cGGGAGcGUACGCGGCCCgaaacaucacuauacGCACgCUCGg -3'
miRNA:   3'- -UUUUCuUAUGCGCCGGGa--------------CGUG-GAGC- -5'
24400 5' -53.6 NC_005264.1 + 150637 0.73 0.652058
Target:  5'- -cGAGGcgGCGCGcaucGCCCUGCgaccauGCCUCGg -3'
miRNA:   3'- uuUUCUuaUGCGC----CGGGACG------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 31610 0.73 0.652058
Target:  5'- -cGAGGcgGCGCGcaucGCCCUGCgaccauGCCUCGg -3'
miRNA:   3'- uuUUCUuaUGCGC----CGGGACG------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 55564 0.71 0.763186
Target:  5'- gAGGGGGGaGCGCGGCCCacugcagcggacaUGCGCC-CGu -3'
miRNA:   3'- -UUUUCUUaUGCGCCGGG-------------ACGUGGaGC- -5'
24400 5' -53.6 NC_005264.1 + 129056 0.71 0.792699
Target:  5'- --cGGcGUGCGCGGCUCgauUGCGCCUUu -3'
miRNA:   3'- uuuUCuUAUGCGCCGGG---ACGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 156705 0.7 0.801921
Target:  5'- ---cGGGcGCGCGGCCCUcGC-CCUCc -3'
miRNA:   3'- uuuuCUUaUGCGCCGGGA-CGuGGAGc -5'
24400 5' -53.6 NC_005264.1 + 37679 0.7 0.801921
Target:  5'- ---cGGGcGCGCGGCCCUcGC-CCUCc -3'
miRNA:   3'- uuuuCUUaUGCGCCGGGA-CGuGGAGc -5'
24400 5' -53.6 NC_005264.1 + 43904 0.7 0.819873
Target:  5'- gGAGAcGAuaGCGCGGCCgU-CGCCUCGa -3'
miRNA:   3'- -UUUU-CUuaUGCGCCGGgAcGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 27233 0.7 0.837108
Target:  5'- ---cGAAUagcGCGCGGCCUucUGCGCuCUCu -3'
miRNA:   3'- uuuuCUUA---UGCGCCGGG--ACGUG-GAGc -5'
24400 5' -53.6 NC_005264.1 + 7394 0.69 0.845436
Target:  5'- ---cGAu--CGCGGCCCcgGCGCCgUCGu -3'
miRNA:   3'- uuuuCUuauGCGCCGGGa-CGUGG-AGC- -5'
24400 5' -53.6 NC_005264.1 + 19869 0.69 0.853561
Target:  5'- --cAGcuUGCGCGGCCUuaUGCACCg-- -3'
miRNA:   3'- uuuUCuuAUGCGCCGGG--ACGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 117369 0.69 0.861475
Target:  5'- cGAAGAGUGCgccaaguucaucGCGGCCCUgucugGCGCCagGg -3'
miRNA:   3'- uUUUCUUAUG------------CGCCGGGA-----CGUGGagC- -5'
24400 5' -53.6 NC_005264.1 + 160049 0.69 0.861475
Target:  5'- -uGAGGAUGaGCGGCUgUGC-CCUCa -3'
miRNA:   3'- uuUUCUUAUgCGCCGGgACGuGGAGc -5'
24400 5' -53.6 NC_005264.1 + 814 0.69 0.869172
Target:  5'- ---uGggUGCGCGGCCg-GCuuuaGCCUCu -3'
miRNA:   3'- uuuuCuuAUGCGCCGGgaCG----UGGAGc -5'
24400 5' -53.6 NC_005264.1 + 131574 0.69 0.876645
Target:  5'- -----uGUGCGCGGCaCCUgGCGCCUa- -3'
miRNA:   3'- uuuucuUAUGCGCCG-GGA-CGUGGAgc -5'
24400 5' -53.6 NC_005264.1 + 69006 0.69 0.876645
Target:  5'- --------cCGCGGCCCUGuCGCCaUCGu -3'
miRNA:   3'- uuuucuuauGCGCCGGGAC-GUGG-AGC- -5'
24400 5' -53.6 NC_005264.1 + 86596 0.69 0.883889
Target:  5'- -uGAGAc-ACGCGGUCgUcGCGCCUCGc -3'
miRNA:   3'- uuUUCUuaUGCGCCGGgA-CGUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.