Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24400 | 5' | -53.6 | NC_005264.1 | + | 114750 | 0.69 | 0.883889 |
Target: 5'- uGAAAGcgcaGCGCGuucuuGCCCUGCGCCgcUCGg -3' miRNA: 3'- -UUUUCuua-UGCGC-----CGGGACGUGG--AGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 137395 | 0.68 | 0.890899 |
Target: 5'- ---cGAGUACGCGGUCCUagGCACg--- -3' miRNA: 3'- uuuuCUUAUGCGCCGGGA--CGUGgagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 126116 | 0.68 | 0.897004 |
Target: 5'- cAAGGAAUGCGCGGCggcugagCCgaugGCACUUgCGc -3' miRNA: 3'- uUUUCUUAUGCGCCG-------GGa---CGUGGA-GC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 55834 | 0.68 | 0.89767 |
Target: 5'- ---uGGcgGCGCGGCUgaCUGgGCCUCa -3' miRNA: 3'- uuuuCUuaUGCGCCGG--GACgUGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 136028 | 0.68 | 0.904198 |
Target: 5'- -cAAGAGcgGCGCGGCCCacuucuCCUCGu -3' miRNA: 3'- uuUUCUUa-UGCGCCGGGacgu--GGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 143398 | 0.68 | 0.904838 |
Target: 5'- gGAGAGAAacccacccgcgcccCGCGGCCacacccgGCGCCUCGc -3' miRNA: 3'- -UUUUCUUau------------GCGCCGGga-----CGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 148194 | 0.68 | 0.910481 |
Target: 5'- -uGAGGuuAUugGCGGCCgUcuaGCACUUCGc -3' miRNA: 3'- uuUUCU--UAugCGCCGGgA---CGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 156888 | 0.68 | 0.914732 |
Target: 5'- ---cGAAUGCGCcgcuGCCCUGCgcgagggguuccgaGCCUUGa -3' miRNA: 3'- uuuuCUUAUGCGc---CGGGACG--------------UGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 37862 | 0.68 | 0.914732 |
Target: 5'- ---cGAAUGCGCcgcuGCCCUGCgcgagggguuccgaGCCUUGa -3' miRNA: 3'- uuuuCUUAUGCGc---CGGGACG--------------UGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 92610 | 0.68 | 0.916516 |
Target: 5'- ----uGAUGCGCuGGCCCUGCAgaUCUgCGa -3' miRNA: 3'- uuuucUUAUGCG-CCGGGACGU--GGA-GC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 156161 | 0.68 | 0.916516 |
Target: 5'- cGAAGGGcgcauAUGCGCGGCUUUGCGgCguggCGg -3' miRNA: 3'- -UUUUCU-----UAUGCGCCGGGACGUgGa---GC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 124367 | 0.68 | 0.916516 |
Target: 5'- gGAGAGAAaGCGCGGCagcaUGCuACCgugCGg -3' miRNA: 3'- -UUUUCUUaUGCGCCGgg--ACG-UGGa--GC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 11496 | 0.68 | 0.916516 |
Target: 5'- cGAAGGccGCGCGGCCCuUGC-CCa-- -3' miRNA: 3'- uUUUCUuaUGCGCCGGG-ACGuGGagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 154345 | 0.67 | 0.922301 |
Target: 5'- -cAAGAucUGCGcCGGCCCacucUGCugCUUGg -3' miRNA: 3'- uuUUCUu-AUGC-GCCGGG----ACGugGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 9681 | 0.67 | 0.922301 |
Target: 5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3' miRNA: 3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 128708 | 0.67 | 0.922301 |
Target: 5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3' miRNA: 3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 51770 | 0.67 | 0.927835 |
Target: 5'- gAAGGGGAgcucGCGCGGCg--GCACUUCGu -3' miRNA: 3'- -UUUUCUUa---UGCGCCGggaCGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 64294 | 0.67 | 0.933118 |
Target: 5'- ---cGAGUAuCGCGGCCCacaGCGCgUUGc -3' miRNA: 3'- uuuuCUUAU-GCGCCGGGa--CGUGgAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 33 | 0.67 | 0.933118 |
Target: 5'- --------cCGCGGCCCUaGCugUUCGa -3' miRNA: 3'- uuuucuuauGCGCCGGGA-CGugGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 98022 | 0.67 | 0.933118 |
Target: 5'- --cGGAAaccguCGUGaGCCCUGCGCUUCc -3' miRNA: 3'- uuuUCUUau---GCGC-CGGGACGUGGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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