miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 5' -53.6 NC_005264.1 + 109913 0.67 0.942933
Target:  5'- -------gGCGCGGCCaugcaaUGCcCCUCGa -3'
miRNA:   3'- uuuucuuaUGCGCCGGg-----ACGuGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 50331 0.67 0.942933
Target:  5'- ---cGAGUACGCGGCgucgaccuuguCCUGCGgcagccCUUCGg -3'
miRNA:   3'- uuuuCUUAUGCGCCG-----------GGACGU------GGAGC- -5'
24400 5' -53.6 NC_005264.1 + 38326 0.67 0.93815
Target:  5'- -cGAGggUugGCgGGCCCUG-GCCg-- -3'
miRNA:   3'- uuUUCuuAugCG-CCGGGACgUGGagc -5'
24400 5' -53.6 NC_005264.1 + 157353 0.67 0.93815
Target:  5'- -cGAGggUugGCgGGCCCUG-GCCg-- -3'
miRNA:   3'- uuUUCuuAugCG-CCGGGACgUGGagc -5'
24400 5' -53.6 NC_005264.1 + 33 0.67 0.933118
Target:  5'- --------cCGCGGCCCUaGCugUUCGa -3'
miRNA:   3'- uuuucuuauGCGCCGGGA-CGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 64294 0.67 0.933118
Target:  5'- ---cGAGUAuCGCGGCCCacaGCGCgUUGc -3'
miRNA:   3'- uuuuCUUAU-GCGCCGGGa--CGUGgAGC- -5'
24400 5' -53.6 NC_005264.1 + 98022 0.67 0.933118
Target:  5'- --cGGAAaccguCGUGaGCCCUGCGCUUCc -3'
miRNA:   3'- uuuUCUUau---GCGC-CGGGACGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 51770 0.67 0.927835
Target:  5'- gAAGGGGAgcucGCGCGGCg--GCACUUCGu -3'
miRNA:   3'- -UUUUCUUa---UGCGCCGggaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 154345 0.67 0.922301
Target:  5'- -cAAGAucUGCGcCGGCCCacucUGCugCUUGg -3'
miRNA:   3'- uuUUCUu-AUGC-GCCGGG----ACGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 128708 0.67 0.922301
Target:  5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3'
miRNA:   3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 9681 0.67 0.922301
Target:  5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3'
miRNA:   3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 156161 0.68 0.916516
Target:  5'- cGAAGGGcgcauAUGCGCGGCUUUGCGgCguggCGg -3'
miRNA:   3'- -UUUUCU-----UAUGCGCCGGGACGUgGa---GC- -5'
24400 5' -53.6 NC_005264.1 + 11496 0.68 0.916516
Target:  5'- cGAAGGccGCGCGGCCCuUGC-CCa-- -3'
miRNA:   3'- uUUUCUuaUGCGCCGGG-ACGuGGagc -5'
24400 5' -53.6 NC_005264.1 + 124367 0.68 0.916516
Target:  5'- gGAGAGAAaGCGCGGCagcaUGCuACCgugCGg -3'
miRNA:   3'- -UUUUCUUaUGCGCCGgg--ACG-UGGa--GC- -5'
24400 5' -53.6 NC_005264.1 + 92610 0.68 0.916516
Target:  5'- ----uGAUGCGCuGGCCCUGCAgaUCUgCGa -3'
miRNA:   3'- uuuucUUAUGCG-CCGGGACGU--GGA-GC- -5'
24400 5' -53.6 NC_005264.1 + 37862 0.68 0.914732
Target:  5'- ---cGAAUGCGCcgcuGCCCUGCgcgagggguuccgaGCCUUGa -3'
miRNA:   3'- uuuuCUUAUGCGc---CGGGACG--------------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 156888 0.68 0.914732
Target:  5'- ---cGAAUGCGCcgcuGCCCUGCgcgagggguuccgaGCCUUGa -3'
miRNA:   3'- uuuuCUUAUGCGc---CGGGACG--------------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 148194 0.68 0.910481
Target:  5'- -uGAGGuuAUugGCGGCCgUcuaGCACUUCGc -3'
miRNA:   3'- uuUUCU--UAugCGCCGGgA---CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 143398 0.68 0.904838
Target:  5'- gGAGAGAAacccacccgcgcccCGCGGCCacacccgGCGCCUCGc -3'
miRNA:   3'- -UUUUCUUau------------GCGCCGGga-----CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 136028 0.68 0.904198
Target:  5'- -cAAGAGcgGCGCGGCCCacuucuCCUCGu -3'
miRNA:   3'- uuUUCUUa-UGCGCCGGGacgu--GGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.