miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 5' -53.6 NC_005264.1 + 33 0.67 0.933118
Target:  5'- --------cCGCGGCCCUaGCugUUCGa -3'
miRNA:   3'- uuuucuuauGCGCCGGGA-CGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 814 0.69 0.869172
Target:  5'- ---uGggUGCGCGGCCg-GCuuuaGCCUCu -3'
miRNA:   3'- uuuuCuuAUGCGCCGGgaCG----UGGAGc -5'
24400 5' -53.6 NC_005264.1 + 4779 0.66 0.947468
Target:  5'- ------cUGCGCGGCgCCguucgcGCACCUCc -3'
miRNA:   3'- uuuucuuAUGCGCCG-GGa-----CGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 7394 0.69 0.845436
Target:  5'- ---cGAu--CGCGGCCCcgGCGCCgUCGu -3'
miRNA:   3'- uuuuCUuauGCGCCGGGa-CGUGG-AGC- -5'
24400 5' -53.6 NC_005264.1 + 9681 0.67 0.922301
Target:  5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3'
miRNA:   3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 11496 0.68 0.916516
Target:  5'- cGAAGGccGCGCGGCCCuUGC-CCa-- -3'
miRNA:   3'- uUUUCUuaUGCGCCGGG-ACGuGGagc -5'
24400 5' -53.6 NC_005264.1 + 13958 0.66 0.955808
Target:  5'- cGAGAGAuaaGCGCGGCCaaagaUGCGuacgcucuCCUCu -3'
miRNA:   3'- -UUUUCUua-UGCGCCGGg----ACGU--------GGAGc -5'
24400 5' -53.6 NC_005264.1 + 17046 0.66 0.966551
Target:  5'- ---uGAGUACucuGCGGUCCUuauucGCGCaCUCGg -3'
miRNA:   3'- uuuuCUUAUG---CGCCGGGA-----CGUG-GAGC- -5'
24400 5' -53.6 NC_005264.1 + 19869 0.69 0.853561
Target:  5'- --cAGcuUGCGCGGCCUuaUGCACCg-- -3'
miRNA:   3'- uuuUCuuAUGCGCCGGG--ACGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 27233 0.7 0.837108
Target:  5'- ---cGAAUagcGCGCGGCCUucUGCGCuCUCu -3'
miRNA:   3'- uuuuCUUA---UGCGCCGGG--ACGUG-GAGc -5'
24400 5' -53.6 NC_005264.1 + 31610 0.73 0.652058
Target:  5'- -cGAGGcgGCGCGcaucGCCCUGCgaccauGCCUCGg -3'
miRNA:   3'- uuUUCUuaUGCGC----CGGGACG------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 37679 0.7 0.801921
Target:  5'- ---cGGGcGCGCGGCCCUcGC-CCUCc -3'
miRNA:   3'- uuuuCUUaUGCGCCGGGA-CGuGGAGc -5'
24400 5' -53.6 NC_005264.1 + 37862 0.68 0.914732
Target:  5'- ---cGAAUGCGCcgcuGCCCUGCgcgagggguuccgaGCCUUGa -3'
miRNA:   3'- uuuuCUUAUGCGc---CGGGACG--------------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 38326 0.67 0.93815
Target:  5'- -cGAGggUugGCgGGCCCUG-GCCg-- -3'
miRNA:   3'- uuUUCuuAugCG-CCGGGACgUGGagc -5'
24400 5' -53.6 NC_005264.1 + 39431 0.66 0.951759
Target:  5'- --cAGAcUACuagcugGCGGUUCUGCAUCUCGc -3'
miRNA:   3'- uuuUCUuAUG------CGCCGGGACGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 43710 0.66 0.955808
Target:  5'- aAAAGGAAacucgaGCGGCCCgcgUGCGCCg-- -3'
miRNA:   3'- -UUUUCUUaug---CGCCGGG---ACGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 43904 0.7 0.819873
Target:  5'- gGAGAcGAuaGCGCGGCCgU-CGCCUCGa -3'
miRNA:   3'- -UUUU-CUuaUGCGCCGGgAcGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 48340 0.66 0.966551
Target:  5'- uGGGGAGUugGCGcacGCCaugGCgGCCUCGu -3'
miRNA:   3'- uUUUCUUAugCGC---CGGga-CG-UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 50331 0.67 0.942933
Target:  5'- ---cGAGUACGCGGCgucgaccuuguCCUGCGgcagccCUUCGg -3'
miRNA:   3'- uuuuCUUAUGCGCCG-----------GGACGU------GGAGC- -5'
24400 5' -53.6 NC_005264.1 + 51104 0.66 0.947468
Target:  5'- ----cGGUGCuGCGGUCUgcucGCGCCUCGa -3'
miRNA:   3'- uuuucUUAUG-CGCCGGGa---CGUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.