Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24400 | 5' | -53.6 | NC_005264.1 | + | 113026 | 1.07 | 0.005873 |
Target: 5'- aAAAAGAAUACGCGGCCCUGCACCUCGa -3' miRNA: 3'- -UUUUCUUAUGCGCCGGGACGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 114699 | 0.8 | 0.322415 |
Target: 5'- -cAGGAuUGCGCGGUCUcgUGCGCCUCGa -3' miRNA: 3'- uuUUCUuAUGCGCCGGG--ACGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 114750 | 0.69 | 0.883889 |
Target: 5'- uGAAAGcgcaGCGCGuucuuGCCCUGCGCCgcUCGg -3' miRNA: 3'- -UUUUCuua-UGCGC-----CGGGACGUGG--AGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 117369 | 0.69 | 0.861475 |
Target: 5'- cGAAGAGUGCgccaaguucaucGCGGCCCUgucugGCGCCagGg -3' miRNA: 3'- uUUUCUUAUG------------CGCCGGGA-----CGUGGagC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 124367 | 0.68 | 0.916516 |
Target: 5'- gGAGAGAAaGCGCGGCagcaUGCuACCgugCGg -3' miRNA: 3'- -UUUUCUUaUGCGCCGgg--ACG-UGGa--GC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 126116 | 0.68 | 0.897004 |
Target: 5'- cAAGGAAUGCGCGGCggcugagCCgaugGCACUUgCGc -3' miRNA: 3'- uUUUCUUAUGCGCCG-------GGa---CGUGGA-GC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 126398 | 0.66 | 0.963888 |
Target: 5'- gAGGAGAGgcaagucgucucCGCGGCCUgcagguacuugggGCGCCUCa -3' miRNA: 3'- -UUUUCUUau----------GCGCCGGGa------------CGUGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 126630 | 0.66 | 0.95962 |
Target: 5'- --cAGAAaACGC-GUCgaGCACCUCGg -3' miRNA: 3'- uuuUCUUaUGCGcCGGgaCGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 128708 | 0.67 | 0.922301 |
Target: 5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3' miRNA: 3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 129056 | 0.71 | 0.792699 |
Target: 5'- --cGGcGUGCGCGGCUCgauUGCGCCUUu -3' miRNA: 3'- uuuUCuUAUGCGCCGGG---ACGUGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 131574 | 0.69 | 0.876645 |
Target: 5'- -----uGUGCGCGGCaCCUgGCGCCUa- -3' miRNA: 3'- uuuucuUAUGCGCCG-GGA-CGUGGAgc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 133353 | 0.66 | 0.966551 |
Target: 5'- uAGAGAc--CGCGGCCCU---CCUCGa -3' miRNA: 3'- uUUUCUuauGCGCCGGGAcguGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 136028 | 0.68 | 0.904198 |
Target: 5'- -cAAGAGcgGCGCGGCCCacuucuCCUCGu -3' miRNA: 3'- uuUUCUUa-UGCGCCGGGacgu--GGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 137395 | 0.68 | 0.890899 |
Target: 5'- ---cGAGUACGCGGUCCUagGCACg--- -3' miRNA: 3'- uuuuCUUAUGCGCCGGGA--CGUGgagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 143398 | 0.68 | 0.904838 |
Target: 5'- gGAGAGAAacccacccgcgcccCGCGGCCacacccgGCGCCUCGc -3' miRNA: 3'- -UUUUCUUau------------GCGCCGGga-----CGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 148194 | 0.68 | 0.910481 |
Target: 5'- -uGAGGuuAUugGCGGCCgUcuaGCACUUCGc -3' miRNA: 3'- uuUUCU--UAugCGCCGGgA---CGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 150637 | 0.73 | 0.652058 |
Target: 5'- -cGAGGcgGCGCGcaucGCCCUGCgaccauGCCUCGg -3' miRNA: 3'- uuUUCUuaUGCGC----CGGGACG------UGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 154345 | 0.67 | 0.922301 |
Target: 5'- -cAAGAucUGCGcCGGCCCacucUGCugCUUGg -3' miRNA: 3'- uuUUCUu-AUGC-GCCGGG----ACGugGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 156161 | 0.68 | 0.916516 |
Target: 5'- cGAAGGGcgcauAUGCGCGGCUUUGCGgCguggCGg -3' miRNA: 3'- -UUUUCU-----UAUGCGCCGGGACGUgGa---GC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 156705 | 0.7 | 0.801921 |
Target: 5'- ---cGGGcGCGCGGCCCUcGC-CCUCc -3' miRNA: 3'- uuuuCUUaUGCGCCGGGA-CGuGGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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