miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 5' -53.6 NC_005264.1 + 162736 0.66 0.955808
Target:  5'- aAAAGGAAacucgaGCGGCCCgcgUGCGCCg-- -3'
miRNA:   3'- -UUUUCUUaug---CGCCGGG---ACGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 160049 0.69 0.861475
Target:  5'- -uGAGGAUGaGCGGCUgUGC-CCUCa -3'
miRNA:   3'- uuUUCUUAUgCGCCGGgACGuGGAGc -5'
24400 5' -53.6 NC_005264.1 + 157353 0.67 0.93815
Target:  5'- -cGAGggUugGCgGGCCCUG-GCCg-- -3'
miRNA:   3'- uuUUCuuAugCG-CCGGGACgUGGagc -5'
24400 5' -53.6 NC_005264.1 + 156888 0.68 0.914732
Target:  5'- ---cGAAUGCGCcgcuGCCCUGCgcgagggguuccgaGCCUUGa -3'
miRNA:   3'- uuuuCUUAUGCGc---CGGGACG--------------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 156705 0.7 0.801921
Target:  5'- ---cGGGcGCGCGGCCCUcGC-CCUCc -3'
miRNA:   3'- uuuuCUUaUGCGCCGGGA-CGuGGAGc -5'
24400 5' -53.6 NC_005264.1 + 156161 0.68 0.916516
Target:  5'- cGAAGGGcgcauAUGCGCGGCUUUGCGgCguggCGg -3'
miRNA:   3'- -UUUUCU-----UAUGCGCCGGGACGUgGa---GC- -5'
24400 5' -53.6 NC_005264.1 + 154345 0.67 0.922301
Target:  5'- -cAAGAucUGCGcCGGCCCacucUGCugCUUGg -3'
miRNA:   3'- uuUUCUu-AUGC-GCCGGG----ACGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 150637 0.73 0.652058
Target:  5'- -cGAGGcgGCGCGcaucGCCCUGCgaccauGCCUCGg -3'
miRNA:   3'- uuUUCUuaUGCGC----CGGGACG------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 148194 0.68 0.910481
Target:  5'- -uGAGGuuAUugGCGGCCgUcuaGCACUUCGc -3'
miRNA:   3'- uuUUCU--UAugCGCCGGgA---CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 143398 0.68 0.904838
Target:  5'- gGAGAGAAacccacccgcgcccCGCGGCCacacccgGCGCCUCGc -3'
miRNA:   3'- -UUUUCUUau------------GCGCCGGga-----CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 137395 0.68 0.890899
Target:  5'- ---cGAGUACGCGGUCCUagGCACg--- -3'
miRNA:   3'- uuuuCUUAUGCGCCGGGA--CGUGgagc -5'
24400 5' -53.6 NC_005264.1 + 136028 0.68 0.904198
Target:  5'- -cAAGAGcgGCGCGGCCCacuucuCCUCGu -3'
miRNA:   3'- uuUUCUUa-UGCGCCGGGacgu--GGAGC- -5'
24400 5' -53.6 NC_005264.1 + 133353 0.66 0.966551
Target:  5'- uAGAGAc--CGCGGCCCU---CCUCGa -3'
miRNA:   3'- uUUUCUuauGCGCCGGGAcguGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 131574 0.69 0.876645
Target:  5'- -----uGUGCGCGGCaCCUgGCGCCUa- -3'
miRNA:   3'- uuuucuUAUGCGCCG-GGA-CGUGGAgc -5'
24400 5' -53.6 NC_005264.1 + 129056 0.71 0.792699
Target:  5'- --cGGcGUGCGCGGCUCgauUGCGCCUUu -3'
miRNA:   3'- uuuUCuUAUGCGCCGGG---ACGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 128708 0.67 0.922301
Target:  5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3'
miRNA:   3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 126630 0.66 0.95962
Target:  5'- --cAGAAaACGC-GUCgaGCACCUCGg -3'
miRNA:   3'- uuuUCUUaUGCGcCGGgaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 126398 0.66 0.963888
Target:  5'- gAGGAGAGgcaagucgucucCGCGGCCUgcagguacuugggGCGCCUCa -3'
miRNA:   3'- -UUUUCUUau----------GCGCCGGGa------------CGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 126116 0.68 0.897004
Target:  5'- cAAGGAAUGCGCGGCggcugagCCgaugGCACUUgCGc -3'
miRNA:   3'- uUUUCUUAUGCGCCG-------GGa---CGUGGA-GC- -5'
24400 5' -53.6 NC_005264.1 + 124367 0.68 0.916516
Target:  5'- gGAGAGAAaGCGCGGCagcaUGCuACCgugCGg -3'
miRNA:   3'- -UUUUCUUaUGCGCCGgg--ACG-UGGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.