Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24400 | 5' | -53.6 | NC_005264.1 | + | 117369 | 0.69 | 0.861475 |
Target: 5'- cGAAGAGUGCgccaaguucaucGCGGCCCUgucugGCGCCagGg -3' miRNA: 3'- uUUUCUUAUG------------CGCCGGGA-----CGUGGagC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 114750 | 0.69 | 0.883889 |
Target: 5'- uGAAAGcgcaGCGCGuucuuGCCCUGCGCCgcUCGg -3' miRNA: 3'- -UUUUCuua-UGCGC-----CGGGACGUGG--AGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 114699 | 0.8 | 0.322415 |
Target: 5'- -cAGGAuUGCGCGGUCUcgUGCGCCUCGa -3' miRNA: 3'- uuUUCUuAUGCGCCGGG--ACGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 113026 | 1.07 | 0.005873 |
Target: 5'- aAAAAGAAUACGCGGCCCUGCACCUCGa -3' miRNA: 3'- -UUUUCUUAUGCGCCGGGACGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 109913 | 0.67 | 0.942933 |
Target: 5'- -------gGCGCGGCCaugcaaUGCcCCUCGa -3' miRNA: 3'- uuuucuuaUGCGCCGGg-----ACGuGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 101041 | 0.66 | 0.947468 |
Target: 5'- ---cGAugccCGCGGCCCgguggaGCugCUCGa -3' miRNA: 3'- uuuuCUuau-GCGCCGGGa-----CGugGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 98022 | 0.67 | 0.933118 |
Target: 5'- --cGGAAaccguCGUGaGCCCUGCGCUUCc -3' miRNA: 3'- uuuUCUUau---GCGC-CGGGACGUGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 97892 | 0.66 | 0.9632 |
Target: 5'- cAGAGAAUucCGCGGCCUcGCGaaggcUCUCGc -3' miRNA: 3'- uUUUCUUAu-GCGCCGGGaCGU-----GGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 92724 | 0.66 | 0.955414 |
Target: 5'- -cGGGAGUACGCGGCagcucgauaagguCCUccGCGCCg-- -3' miRNA: 3'- uuUUCUUAUGCGCCG-------------GGA--CGUGGagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 92652 | 0.67 | 0.942933 |
Target: 5'- -------cGCGUGGCCCUcGCGCCg-- -3' miRNA: 3'- uuuucuuaUGCGCCGGGA-CGUGGagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 92610 | 0.68 | 0.916516 |
Target: 5'- ----uGAUGCGCuGGCCCUGCAgaUCUgCGa -3' miRNA: 3'- uuuucUUAUGCG-CCGGGACGU--GGA-GC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 90743 | 0.66 | 0.965569 |
Target: 5'- cGAGAG-AUACGCGGCcauuacgaccgcgaCCaGCACgUCGu -3' miRNA: 3'- -UUUUCuUAUGCGCCG--------------GGaCGUGgAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 87303 | 0.75 | 0.548919 |
Target: 5'- cGGGAGcGUACGCGGCCCgaaacaucacuauacGCACgCUCGg -3' miRNA: 3'- -UUUUCuUAUGCGCCGGGa--------------CGUG-GAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 86596 | 0.69 | 0.883889 |
Target: 5'- -uGAGAc-ACGCGGUCgUcGCGCCUCGc -3' miRNA: 3'- uuUUCUuaUGCGCCGGgA-CGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 78648 | 0.76 | 0.507511 |
Target: 5'- -------cGCgGCGGCCCUGUGCCUCGu -3' miRNA: 3'- uuuucuuaUG-CGCCGGGACGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 70793 | 0.66 | 0.9632 |
Target: 5'- cAAGGA--GCGCGGCCCaccgACCUCc -3' miRNA: 3'- uUUUCUuaUGCGCCGGGacg-UGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 69006 | 0.69 | 0.876645 |
Target: 5'- --------cCGCGGCCCUGuCGCCaUCGu -3' miRNA: 3'- uuuucuuauGCGCCGGGAC-GUGG-AGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 67639 | 0.66 | 0.953408 |
Target: 5'- -cAGGggUguccuGCGCGGCCCgUcuucguuauggcacgGCACCUUGc -3' miRNA: 3'- uuUUCuuA-----UGCGCCGGG-A---------------CGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 67302 | 0.67 | 0.942933 |
Target: 5'- cGAAGggUAuCGCGGCg--GCGCCUUc -3' miRNA: 3'- uUUUCuuAU-GCGCCGggaCGUGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 64294 | 0.67 | 0.933118 |
Target: 5'- ---cGAGUAuCGCGGCCCacaGCGCgUUGc -3' miRNA: 3'- uuuuCUUAU-GCGCCGGGa--CGUGgAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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