miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 5' -53.6 NC_005264.1 + 4779 0.66 0.947468
Target:  5'- ------cUGCGCGGCgCCguucgcGCACCUCc -3'
miRNA:   3'- uuuucuuAUGCGCCG-GGa-----CGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 92610 0.68 0.916516
Target:  5'- ----uGAUGCGCuGGCCCUGCAgaUCUgCGa -3'
miRNA:   3'- uuuucUUAUGCG-CCGGGACGU--GGA-GC- -5'
24400 5' -53.6 NC_005264.1 + 11496 0.68 0.916516
Target:  5'- cGAAGGccGCGCGGCCCuUGC-CCa-- -3'
miRNA:   3'- uUUUCUuaUGCGCCGGG-ACGuGGagc -5'
24400 5' -53.6 NC_005264.1 + 128708 0.67 0.922301
Target:  5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3'
miRNA:   3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 33 0.67 0.933118
Target:  5'- --------cCGCGGCCCUaGCugUUCGa -3'
miRNA:   3'- uuuucuuauGCGCCGGGA-CGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 64294 0.67 0.933118
Target:  5'- ---cGAGUAuCGCGGCCCacaGCGCgUUGc -3'
miRNA:   3'- uuuuCUUAU-GCGCCGGGa--CGUGgAGC- -5'
24400 5' -53.6 NC_005264.1 + 157353 0.67 0.93815
Target:  5'- -cGAGggUugGCgGGCCCUG-GCCg-- -3'
miRNA:   3'- uuUUCuuAugCG-CCGGGACgUGGagc -5'
24400 5' -53.6 NC_005264.1 + 92652 0.67 0.942933
Target:  5'- -------cGCGUGGCCCUcGCGCCg-- -3'
miRNA:   3'- uuuucuuaUGCGCCGGGA-CGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 67302 0.67 0.942933
Target:  5'- cGAAGggUAuCGCGGCg--GCGCCUUc -3'
miRNA:   3'- uUUUCuuAU-GCGCCGggaCGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 156888 0.68 0.914732
Target:  5'- ---cGAAUGCGCcgcuGCCCUGCgcgagggguuccgaGCCUUGa -3'
miRNA:   3'- uuuuCUUAUGCGc---CGGGACG--------------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 148194 0.68 0.910481
Target:  5'- -uGAGGuuAUugGCGGCCgUcuaGCACUUCGc -3'
miRNA:   3'- uuUUCU--UAugCGCCGGgA---CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 136028 0.68 0.904198
Target:  5'- -cAAGAGcgGCGCGGCCCacuucuCCUCGu -3'
miRNA:   3'- uuUUCUUa-UGCGCCGGGacgu--GGAGC- -5'
24400 5' -53.6 NC_005264.1 + 87303 0.75 0.548919
Target:  5'- cGGGAGcGUACGCGGCCCgaaacaucacuauacGCACgCUCGg -3'
miRNA:   3'- -UUUUCuUAUGCGCCGGGa--------------CGUG-GAGC- -5'
24400 5' -53.6 NC_005264.1 + 150637 0.73 0.652058
Target:  5'- -cGAGGcgGCGCGcaucGCCCUGCgaccauGCCUCGg -3'
miRNA:   3'- uuUUCUuaUGCGC----CGGGACG------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 55564 0.71 0.763186
Target:  5'- gAGGGGGGaGCGCGGCCCacugcagcggacaUGCGCC-CGu -3'
miRNA:   3'- -UUUUCUUaUGCGCCGGG-------------ACGUGGaGC- -5'
24400 5' -53.6 NC_005264.1 + 156705 0.7 0.801921
Target:  5'- ---cGGGcGCGCGGCCCUcGC-CCUCc -3'
miRNA:   3'- uuuuCUUaUGCGCCGGGA-CGuGGAGc -5'
24400 5' -53.6 NC_005264.1 + 27233 0.7 0.837108
Target:  5'- ---cGAAUagcGCGCGGCCUucUGCGCuCUCu -3'
miRNA:   3'- uuuuCUUA---UGCGCCGGG--ACGUG-GAGc -5'
24400 5' -53.6 NC_005264.1 + 7394 0.69 0.845436
Target:  5'- ---cGAu--CGCGGCCCcgGCGCCgUCGu -3'
miRNA:   3'- uuuuCUuauGCGCCGGGa-CGUGG-AGC- -5'
24400 5' -53.6 NC_005264.1 + 814 0.69 0.869172
Target:  5'- ---uGggUGCGCGGCCg-GCuuuaGCCUCu -3'
miRNA:   3'- uuuuCuuAUGCGCCGGgaCG----UGGAGc -5'
24400 5' -53.6 NC_005264.1 + 55834 0.68 0.89767
Target:  5'- ---uGGcgGCGCGGCUgaCUGgGCCUCa -3'
miRNA:   3'- uuuuCUuaUGCGCCGG--GACgUGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.