miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 5' -53.6 NC_005264.1 + 156705 0.7 0.801921
Target:  5'- ---cGGGcGCGCGGCCCUcGC-CCUCc -3'
miRNA:   3'- uuuuCUUaUGCGCCGGGA-CGuGGAGc -5'
24400 5' -53.6 NC_005264.1 + 27233 0.7 0.837108
Target:  5'- ---cGAAUagcGCGCGGCCUucUGCGCuCUCu -3'
miRNA:   3'- uuuuCUUA---UGCGCCGGG--ACGUG-GAGc -5'
24400 5' -53.6 NC_005264.1 + 7394 0.69 0.845436
Target:  5'- ---cGAu--CGCGGCCCcgGCGCCgUCGu -3'
miRNA:   3'- uuuuCUuauGCGCCGGGa-CGUGG-AGC- -5'
24400 5' -53.6 NC_005264.1 + 814 0.69 0.869172
Target:  5'- ---uGggUGCGCGGCCg-GCuuuaGCCUCu -3'
miRNA:   3'- uuuuCuuAUGCGCCGGgaCG----UGGAGc -5'
24400 5' -53.6 NC_005264.1 + 92610 0.68 0.916516
Target:  5'- ----uGAUGCGCuGGCCCUGCAgaUCUgCGa -3'
miRNA:   3'- uuuucUUAUGCG-CCGGGACGU--GGA-GC- -5'
24400 5' -53.6 NC_005264.1 + 156888 0.68 0.914732
Target:  5'- ---cGAAUGCGCcgcuGCCCUGCgcgagggguuccgaGCCUUGa -3'
miRNA:   3'- uuuuCUUAUGCGc---CGGGACG--------------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 148194 0.68 0.910481
Target:  5'- -uGAGGuuAUugGCGGCCgUcuaGCACUUCGc -3'
miRNA:   3'- uuUUCU--UAugCGCCGGgA---CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 136028 0.68 0.904198
Target:  5'- -cAAGAGcgGCGCGGCCCacuucuCCUCGu -3'
miRNA:   3'- uuUUCUUa-UGCGCCGGGacgu--GGAGC- -5'
24400 5' -53.6 NC_005264.1 + 55834 0.68 0.89767
Target:  5'- ---uGGcgGCGCGGCUgaCUGgGCCUCa -3'
miRNA:   3'- uuuuCUuaUGCGCCGG--GACgUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 109913 0.67 0.942933
Target:  5'- -------gGCGCGGCCaugcaaUGCcCCUCGa -3'
miRNA:   3'- uuuucuuaUGCGCCGGg-----ACGuGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 50331 0.67 0.942933
Target:  5'- ---cGAGUACGCGGCgucgaccuuguCCUGCGgcagccCUUCGg -3'
miRNA:   3'- uuuuCUUAUGCGCCG-----------GGACGU------GGAGC- -5'
24400 5' -53.6 NC_005264.1 + 101041 0.66 0.947468
Target:  5'- ---cGAugccCGCGGCCCgguggaGCugCUCGa -3'
miRNA:   3'- uuuuCUuau-GCGCCGGGa-----CGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 67639 0.66 0.953408
Target:  5'- -cAGGggUguccuGCGCGGCCCgUcuucguuauggcacgGCACCUUGc -3'
miRNA:   3'- uuUUCuuA-----UGCGCCGGG-A---------------CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 13958 0.66 0.955808
Target:  5'- cGAGAGAuaaGCGCGGCCaaagaUGCGuacgcucuCCUCu -3'
miRNA:   3'- -UUUUCUua-UGCGCCGGg----ACGU--------GGAGc -5'
24400 5' -53.6 NC_005264.1 + 43710 0.66 0.955808
Target:  5'- aAAAGGAAacucgaGCGGCCCgcgUGCGCCg-- -3'
miRNA:   3'- -UUUUCUUaug---CGCCGGG---ACGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 60975 0.66 0.95962
Target:  5'- --uGGugguCGCGGUguaCCUGCugCUCGg -3'
miRNA:   3'- uuuUCuuauGCGCCG---GGACGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 126630 0.66 0.95962
Target:  5'- --cAGAAaACGC-GUCgaGCACCUCGg -3'
miRNA:   3'- uuuUCUUaUGCGcCGGgaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 126398 0.66 0.963888
Target:  5'- gAGGAGAGgcaagucgucucCGCGGCCUgcagguacuugggGCGCCUCa -3'
miRNA:   3'- -UUUUCUUau----------GCGCCGGGa------------CGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 17046 0.66 0.966551
Target:  5'- ---uGAGUACucuGCGGUCCUuauucGCGCaCUCGg -3'
miRNA:   3'- uuuuCUUAUG---CGCCGGGA-----CGUG-GAGC- -5'
24400 5' -53.6 NC_005264.1 + 113026 1.07 0.005873
Target:  5'- aAAAAGAAUACGCGGCCCUGCACCUCGa -3'
miRNA:   3'- -UUUUCUUAUGCGCCGGGACGUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.