miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 5' -53.6 NC_005264.1 + 133353 0.66 0.966551
Target:  5'- uAGAGAc--CGCGGCCCU---CCUCGa -3'
miRNA:   3'- uUUUCUuauGCGCCGGGAcguGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 156161 0.68 0.916516
Target:  5'- cGAAGGGcgcauAUGCGCGGCUUUGCGgCguggCGg -3'
miRNA:   3'- -UUUUCU-----UAUGCGCCGGGACGUgGa---GC- -5'
24400 5' -53.6 NC_005264.1 + 143398 0.68 0.904838
Target:  5'- gGAGAGAAacccacccgcgcccCGCGGCCacacccgGCGCCUCGc -3'
miRNA:   3'- -UUUUCUUau------------GCGCCGGga-----CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 113026 1.07 0.005873
Target:  5'- aAAAAGAAUACGCGGCCCUGCACCUCGa -3'
miRNA:   3'- -UUUUCUUAUGCGCCGGGACGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 60975 0.66 0.95962
Target:  5'- --uGGugguCGCGGUguaCCUGCugCUCGg -3'
miRNA:   3'- uuuUCuuauGCGCCG---GGACGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 43710 0.66 0.955808
Target:  5'- aAAAGGAAacucgaGCGGCCCgcgUGCGCCg-- -3'
miRNA:   3'- -UUUUCUUaug---CGCCGGG---ACGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 67639 0.66 0.953408
Target:  5'- -cAGGggUguccuGCGCGGCCCgUcuucguuauggcacgGCACCUUGc -3'
miRNA:   3'- uuUUCuuA-----UGCGCCGGG-A---------------CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 101041 0.66 0.947468
Target:  5'- ---cGAugccCGCGGCCCgguggaGCugCUCGa -3'
miRNA:   3'- uuuuCUuau-GCGCCGGGa-----CGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 38326 0.67 0.93815
Target:  5'- -cGAGggUugGCgGGCCCUG-GCCg-- -3'
miRNA:   3'- uuUUCuuAugCG-CCGGGACgUGGagc -5'
24400 5' -53.6 NC_005264.1 + 124367 0.68 0.916516
Target:  5'- gGAGAGAAaGCGCGGCagcaUGCuACCgugCGg -3'
miRNA:   3'- -UUUUCUUaUGCGCCGgg--ACG-UGGa--GC- -5'
24400 5' -53.6 NC_005264.1 + 51770 0.67 0.927835
Target:  5'- gAAGGGGAgcucGCGCGGCg--GCACUUCGu -3'
miRNA:   3'- -UUUUCUUa---UGCGCCGggaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 109913 0.67 0.942933
Target:  5'- -------gGCGCGGCCaugcaaUGCcCCUCGa -3'
miRNA:   3'- uuuucuuaUGCGCCGGg-----ACGuGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 17046 0.66 0.966551
Target:  5'- ---uGAGUACucuGCGGUCCUuauucGCGCaCUCGg -3'
miRNA:   3'- uuuuCUUAUG---CGCCGGGA-----CGUG-GAGC- -5'
24400 5' -53.6 NC_005264.1 + 154345 0.67 0.922301
Target:  5'- -cAAGAucUGCGcCGGCCCacucUGCugCUUGg -3'
miRNA:   3'- uuUUCUu-AUGC-GCCGGG----ACGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 126398 0.66 0.963888
Target:  5'- gAGGAGAGgcaagucgucucCGCGGCCUgcagguacuugggGCGCCUCa -3'
miRNA:   3'- -UUUUCUUau----------GCGCCGGGa------------CGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 50331 0.67 0.942933
Target:  5'- ---cGAGUACGCGGCgucgaccuuguCCUGCGgcagccCUUCGg -3'
miRNA:   3'- uuuuCUUAUGCGCCG-----------GGACGU------GGAGC- -5'
24400 5' -53.6 NC_005264.1 + 9681 0.67 0.922301
Target:  5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3'
miRNA:   3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 37862 0.68 0.914732
Target:  5'- ---cGAAUGCGCcgcuGCCCUGCgcgagggguuccgaGCCUUGa -3'
miRNA:   3'- uuuuCUUAUGCGc---CGGGACG--------------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 126630 0.66 0.95962
Target:  5'- --cAGAAaACGC-GUCgaGCACCUCGg -3'
miRNA:   3'- uuuUCUUaUGCGcCGGgaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 13958 0.66 0.955808
Target:  5'- cGAGAGAuaaGCGCGGCCaaagaUGCGuacgcucuCCUCu -3'
miRNA:   3'- -UUUUCUua-UGCGCCGGg----ACGU--------GGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.