miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24400 5' -53.6 NC_005264.1 + 114750 0.69 0.883889
Target:  5'- uGAAAGcgcaGCGCGuucuuGCCCUGCGCCgcUCGg -3'
miRNA:   3'- -UUUUCuua-UGCGC-----CGGGACGUGG--AGC- -5'
24400 5' -53.6 NC_005264.1 + 37862 0.68 0.914732
Target:  5'- ---cGAAUGCGCcgcuGCCCUGCgcgagggguuccgaGCCUUGa -3'
miRNA:   3'- uuuuCUUAUGCGc---CGGGACG--------------UGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 9681 0.67 0.922301
Target:  5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3'
miRNA:   3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 43904 0.7 0.819873
Target:  5'- gGAGAcGAuaGCGCGGCCgU-CGCCUCGa -3'
miRNA:   3'- -UUUU-CUuaUGCGCCGGgAcGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 137395 0.68 0.890899
Target:  5'- ---cGAGUACGCGGUCCUagGCACg--- -3'
miRNA:   3'- uuuuCUUAUGCGCCGGGA--CGUGgagc -5'
24400 5' -53.6 NC_005264.1 + 154345 0.67 0.922301
Target:  5'- -cAAGAucUGCGcCGGCCCacucUGCugCUUGg -3'
miRNA:   3'- uuUUCUu-AUGC-GCCGGG----ACGugGAGC- -5'
24400 5' -53.6 NC_005264.1 + 19869 0.69 0.853561
Target:  5'- --cAGcuUGCGCGGCCUuaUGCACCg-- -3'
miRNA:   3'- uuuUCuuAUGCGCCGGG--ACGUGGagc -5'
24400 5' -53.6 NC_005264.1 + 51770 0.67 0.927835
Target:  5'- gAAGGGGAgcucGCGCGGCg--GCACUUCGu -3'
miRNA:   3'- -UUUUCUUa---UGCGCCGggaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 69006 0.69 0.876645
Target:  5'- --------cCGCGGCCCUGuCGCCaUCGu -3'
miRNA:   3'- uuuucuuauGCGCCGGGAC-GUGG-AGC- -5'
24400 5' -53.6 NC_005264.1 + 37679 0.7 0.801921
Target:  5'- ---cGGGcGCGCGGCCCUcGC-CCUCc -3'
miRNA:   3'- uuuuCUUaUGCGCCGGGA-CGuGGAGc -5'
24400 5' -53.6 NC_005264.1 + 98022 0.67 0.933118
Target:  5'- --cGGAAaccguCGUGaGCCCUGCGCUUCc -3'
miRNA:   3'- uuuUCUUau---GCGC-CGGGACGUGGAGc -5'
24400 5' -53.6 NC_005264.1 + 143398 0.68 0.904838
Target:  5'- gGAGAGAAacccacccgcgcccCGCGGCCacacccgGCGCCUCGc -3'
miRNA:   3'- -UUUUCUUau------------GCGCCGGga-----CGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 156161 0.68 0.916516
Target:  5'- cGAAGGGcgcauAUGCGCGGCUUUGCGgCguggCGg -3'
miRNA:   3'- -UUUUCU-----UAUGCGCCGGGACGUgGa---GC- -5'
24400 5' -53.6 NC_005264.1 + 114699 0.8 0.322415
Target:  5'- -cAGGAuUGCGCGGUCUcgUGCGCCUCGa -3'
miRNA:   3'- uuUUCUuAUGCGCCGGG--ACGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 124367 0.68 0.916516
Target:  5'- gGAGAGAAaGCGCGGCagcaUGCuACCgugCGg -3'
miRNA:   3'- -UUUUCUUaUGCGCCGgg--ACG-UGGa--GC- -5'
24400 5' -53.6 NC_005264.1 + 128708 0.67 0.922301
Target:  5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3'
miRNA:   3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5'
24400 5' -53.6 NC_005264.1 + 11496 0.68 0.916516
Target:  5'- cGAAGGccGCGCGGCCCuUGC-CCa-- -3'
miRNA:   3'- uUUUCUuaUGCGCCGGG-ACGuGGagc -5'
24400 5' -53.6 NC_005264.1 + 7394 0.69 0.845436
Target:  5'- ---cGAu--CGCGGCCCcgGCGCCgUCGu -3'
miRNA:   3'- uuuuCUuauGCGCCGGGa-CGUGG-AGC- -5'
24400 5' -53.6 NC_005264.1 + 97892 0.66 0.9632
Target:  5'- cAGAGAAUucCGCGGCCUcGCGaaggcUCUCGc -3'
miRNA:   3'- uUUUCUUAu-GCGCCGGGaCGU-----GGAGC- -5'
24400 5' -53.6 NC_005264.1 + 90743 0.66 0.965569
Target:  5'- cGAGAG-AUACGCGGCcauuacgaccgcgaCCaGCACgUCGu -3'
miRNA:   3'- -UUUUCuUAUGCGCCG--------------GGaCGUGgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.